Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq6671 116 3e-21 seq169730 96.9 3e-15 seq5352 96.9 3e-15 >seq6671 Length=4556 Score = 116 bits (128), Expect = 3e-21 Identities = 162/221 (73%), Gaps = 7/221 (3%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || || || ||||| ||||| || || || || ||||| ||| | ||| || | | Sbjct 3735 AACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGG--ACAATGTGCGACCAT 3678 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| ||||| ||||||||| | |||||||| |||||||| |||||| |||||||||| Sbjct 3677 CTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGAATACCTTCTTTGT 3618 Query 15270 CACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 | ||||| ||| || ||| |||| || || || || || || ||||| || Sbjct 3617 CTTGGATTTTAGCT-TTAACATTTTCAATAGTGTCAGATGGCTCGACTTCCAAGGTGATT 3559 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 || ||||| || || ||||| ||||| |||||||| ||||| Sbjct 3558 GTCTTACCAGTGAGTGTTTTCACAAAGATTTGCAT-TTTGA 3519 >seq169730 Length=1905 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| |||||||||||||| |||||||||| ||||| || |||||||| |||||| Sbjct 1899 TCTTCCAATTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATTCCCTCTTTG 1840 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || ||| ||| || ||| |||| || ||||| || || || | || ||| Sbjct 1839 TCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACCTCAAGAGTGATG 1780 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||||| || || || || ||||| || || |||||||| Sbjct 1779 GTTTTGCCCGTAAGGGTCTTTACGAAGATCTGCATATT 1742 >seq5352 Length=5729 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 91635 AATATTTCCTAAATCGCCGACGTGTCG-TTCAATTGCATTTGGCGCGCCGTGATCGTGTC 91693 |||||| ||||||||||| | ||| || ||| | | || || ||||| || || | | Sbjct 3155 AATATTACCTAAATCGCCCAAGTGACGATTCTCGT-CGTTCGGTGCGCCATGTTCTTTGC 3213 Query 91694 CGGTGGGATTGAAATGCTCACCAGCAGATGTGCAACCGTTAGTTGTGTCGCCGAACTCGT 91753 | |||||||||||| ||| || |||||||| ||||| || | ||||| || |||| Sbjct 3214 CCTCGGGATTGAAATGTGGACCGGCCGATGTGCAGCCGTTGGTATTATCGCCAAATTCGT 3273 Query 91754 GCACATGAAAACCGTGTAAACCCTTTGGCA 91783 ||||||| || || ||||| ||||||| || Sbjct 3274 GCACATGGAAGCCATGTAAGCCCTTTGCCA 3303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361418211814341