Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq76123 91.5 9e-14 seq6671 89.7 3e-13 >seq76123 Length=2128 Score = 91.5 bits (100), Expect = 9e-14 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 33152 AACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT 33211 || || | ||||| ||| | ||||||||||||||| || || || || || || || || Sbjct 997 AAGCGGAGCACCAGATGAAGTGTCGACTCTTTTTGGATGTTATAGTCGGATAATGTGCGT 1056 Query 33212 TGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCT 33271 || ||||||||||| ||| ||| |||||||||||||| || | || || |||||| Sbjct 1057 CCATCTTCCAATTGCTTACCAGCAAAAATTAAACGTTGCTGATCTGGTGGAATACCTTCT 1116 Query 33272 TTTTC 33276 || || Sbjct 1117 TTATC 1121 >seq6671 Length=4556 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/225 (70%), Gaps = 8/225 (4%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | || || || || || |||||||| || ||||| || | Sbjct 3738 CGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGACAATGTGCGACCA 3679 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || ||||||||||| ||| || || ||||| || ||||| | || || |||||||| Sbjct 3678 TCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGAATACCTTCTTTG 3619 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTC-GTTGGGTTGAACGTCCAGAGT 33330 || | | | || ||| || ||| ||| ||||| | ||| | | || |||| || Sbjct 3618 TCTTGGATTTTAGC---TTTAACATTTTCAATAGTGTCAGATGGCTCG-ACTTCCAAGGT 3563 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTAT 33375 || || || || || || ||||| || || |||||||| || || Sbjct 3562 GATTGTCTTACCAGTGAGTGTTTTCACAAAGATTTGCATTTTGAT 3518 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | || || || || || |||||||| || ||||| || | Sbjct 4194 CGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGACAATGTGCGACCA 4135 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||||||||| ||| || || ||||| || ||||| | || || ||||| || Sbjct 4134 TCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGAATACCTTCCTTG 4075 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || |||| ||| || || | | ||| ||||| |||| || |||| || Sbjct 4074 TCTTGAATCTTGGCC---TTGACATTCTCAATGGTGTCTGATGGTTCGACCTCCAAGGTG 4018 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || ||||| || || | ||| || ||||| || |||||| Sbjct 4017 ATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCATG 3979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318107804530098