Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq6510 95.1 1e-14 >seq6510 Length=41289 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 6500 GCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGAATACCCGGGAAGATAGCAGAA 6559 ||||| ||||| || || || | | || || ||||||||||| |||||||| || ||| Sbjct 17432 GCTTTAGCTGCAATTACGTGCATTAAAGGACCACCTTGAATACCTGGGAAGATTGCTGAA 17373 Query 6560 TTTACTTTCTTGGCGATATCAGCAT---CGTTAGTAAGAATGAGGCCACCACGAGGGCCG 6616 |||| ||| || | || |||| || |||| | ||| | || || | ||||| Sbjct 17372 TTTAATTTTTTCTCAATTTCAGGATTACTTTTAGCTAAAATTAAACCGCCTCTTGGGCCT 17313 Query 6617 CGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGCACCCCATTTGAGTGGATTAGCG 6676 | || ||||||||||| || || || ||||| || ||| | |||||||| | | Sbjct 17312 CTTAATGTTTTATGAGTAGTTGTTGTTACAACATCAGCA---TAAGGCAGTGGATTTGGG 17256 Query 6677 TGAAGACGAGCAGCAACAAAGCCAGCAAAATGGGCCATATCGAC 6720 | | || ||| ||||| || || || | ||| |||||||| || Sbjct 17255 TATAAACCAGCGGCAACTAAACCTGCGACATGCGCCATATCAAC 17212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554166385361960