Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq169730 134 3e-26 seq6671 129 1e-24 seq153791 118 2e-21 seq76123 91.5 3e-13 >seq169730 Length=1905 Score = 134 bits (148), Expect = 3e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 104401 ACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTC 104460 ||| ||||| | |||||| |||||||| || | | ||||||||| ||||| ||||| || Sbjct 1903 ACCATCTTCCAATTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATTCCCTC 1844 Query 104461 TTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGT 104520 ||| ||||||||||| ||||| |||||||| | ||||| || || ||||| || || Sbjct 1843 TTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACCTCAAGAGT 1784 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 || || || || ||||| || ||||| || |||||||| |||| Sbjct 1783 GATGGTTTTGCCCGTAAGGGTCTTTACGAAGATCTGCATATTGT 1740 >seq6671 Length=4556 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| ||||| ||||| || | || | ||| ||||| | ||| || ||| Sbjct 3720 GTGGATTCCTTCTGGATATTGTAGTCGGACAATGTGCGACCATCTTCCAATTGCTTGCCA 3661 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | |||||| || || || || |||||||| || || || || ||||| Sbjct 3660 GCGAAGATCAAACGCTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCTTTA 3601 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | || || || || || || | || || ||||||||||| |||||| Sbjct 3600 ACATTTTCAATAGTGTCAGATGGCTCGACTTCCAAGGTGATTGTCTTACCAGTGAGTGTT 3541 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| || ||||||||| Sbjct 3540 TTCACAAAGATTTGCATTTTG 3520 >seq153791 Length=3075 Score = 118 bits (130), Expect = 2e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| || ||||||||||| || ||||||||||| || | || | ||| ||||| | ||| Sbjct 2628 ATGCAAAGTAGATTCTTTTTGGATATTATAGTCGGAGAATGTGCGACCATCTTCCAATTG 2687 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 ||| |||||||| | | | ||||||||| ||||| ||| | ||||| | |||||||| Sbjct 2688 TTTGCCAGCAAATACCAAACGCTGTTGATCTGGAGGAATTTCCTCTTTTTGCTGAATCTA 2747 Query 104476 TGCTTTTACATTTTC 104490 |||||||||||||| Sbjct 2748 GGCTTTTACATTTTC 2762 >seq76123 Length=2128 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/182 (70%), Gaps = 10/182 (5%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | ||| || ||||| || || |||||||| |||| || | || ||| Sbjct 1003 AGCACCAGATGAAGTGTCGACTCTTTTTGGATGTTATAGTCGGATAATGTGCGTCCATCT 1062 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||| || ||||||||||||| | || ||||| || || || ||||||||||| Sbjct 1063 TCCAATTGCTTACCAGCAAAAATTAAACGTTGCTGATCTGGTGGAATACCTTCTTTATCT 1122 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || | |||| || | ||||||| |||||| || || | ||||| ||| Sbjct 1123 TG----------NTAACATGCTCGATGGTATCGAAAGGTTCCACTTCCAAGGTAATGGTC 1172 Query 104528 TT 104529 || Sbjct 1173 TT 1174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148855090106908