Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq18725 104 6e-18 >seq18725 Length=24047 Score = 104 bits (114), Expect = 6e-18 Identities = 225/333 (68%), Gaps = 4/333 (1%) Strand=Plus/Minus Query 21571 CAAGCATTTGCATGGTTCCACCAACGCCTACGATAACTTCGGTAGTGAACCTATCCTGTC 21630 |||||||||| | || ||| || || || | | ||| || || | | ||| |||| Sbjct 10530 CAAGCATTTGGAGCGTGCCATTAATGCTGACAACGATTTCTGTTGTATAACGATCTTGTC 10471 Query 21631 CGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAGCCTT 21690 || ||| |||| |||||||||||| | |||| ||||||| |||||| || |||| Sbjct 10470 CGTTTTTATCCGTCCATTTTCTTGTTTGTAATTGACCTTCAATATAAACAAGCGAACCTT 10411 Query 21691 TTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTGCCACT 21750 || ||||||| | |||||||| || ||||| || || || | |||||||| | Sbjct 10410 TTTTAAGATATTGACCTGCAATTTCAGCAAGTTTTCCAAAAATAACAATTCGGTGCCATT 10351 Query 21751 CCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCAACTG 21810 | || | || | | ||| || ||||| ||||| ||| ||| || || |||| | Sbjct 10350 CTGTACGATCTTGTGGCTGACCTGTTTGTTTATCTTTCCAAGTTTCCGATGTTGCAATCG 10291 Query 21811 TAAGGTTTGCAAATGCCGTTCCTGATGGTGAATATCTGATTTCTGGATCATGCCC--AAG 21868 | | ||| | || ||| || ||| |||| | | || ||||| ||||| || Sbjct 10290 TTAAGTTCGTAACTGCACCACCATTTGGCATATATTTAACATCAGGATCTTGCCCTAAAT 10231 Query 21869 GCGACCAATAATGATCACCTTATTTACGCCTCT 21901 || ||||||| || || ||||||| ||||| Sbjct 10230 GC-CCCAATAA-AATTACTTTATTTATTCCTCT 10200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124560468961810