Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq172125 109 3e-19 >seq172125 Length=4205 Score = 109 bits (120), Expect = 3e-19 Identities = 188/273 (69%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 3872 AAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATG 3931 ||||| || |||||| ||||| || || || ||||| || || || |||||||| || Sbjct 2705 AAAGGAGTTCATTTTGCTATGGCAGATGGAGGATTCTCTGTCGAAGGGCAAGAAAACATT 2646 Query 3932 CAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATA 3991 |||||||| | || ||| | | || || || |||||||||| |||||||| || || Sbjct 2645 CAAGAAATACTGTCTAAACAACTTTACTTATGCCAATGTTTAACTGCATTGAAAATTCTA 2586 Query 3992 CGAATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGT 4051 ||| ||||| |||| || |||||| |||||||| ||||| || || | || Sbjct 2585 AGAACCGGTGGGCATTTCATTTGCAAATTATTCGATATCTTTACCAGATTCAGCGTGGGA 2526 Query 4052 TTAGTGTATTTGATGTATAGATCTTTTAATCGTATTTGTATTTTCAAACCACATTCATCG 4111 | | | | | ||||||| || ||| | || |||| | ||||| || Sbjct 2525 CTCATTTTTCTAATGTATAACTCATTTGCTGAAATCACTATTATTAAACCTAATAGTAGC 2466 Query 4112 CGACCGGCCAATTCTGAAAGATATTTGGTGTGT 4144 || || || || || |||||||||||||| ||| Sbjct 2465 CGCCCCGCTAACTCAGAAAGATATTTGGTTTGT 2433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 275972522946703