Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq19442 120 2e-22 seq65916 116 2e-21 seq38559 116 2e-21 seq120294 113 2e-20 seq118165 113 2e-20 seq123876 109 3e-19 seq85902 109 3e-19 seq76861 109 3e-19 seq44623 109 3e-19 >seq19442 Length=1766 Score = 120 bits (132), Expect = 2e-22 Identities = 79/87 (91%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 85 TAAAAAA--AAATTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 142 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 143 CGCTCTAACCAACTGAGCTAATGGGCC 169 >seq65916 Length=2296 Score = 116 bits (128), Expect = 2e-21 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 1529 AAATTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1470 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 1469 CAACTGAGCTAATGGGCC 1452 >seq38559 Length=3623 Score = 116 bits (128), Expect = 2e-21 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 1315 AAATTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1374 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 1375 CAACTGAGCTAATGGGCC 1392 >seq120294 Length=1633 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| | || ||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1462 AAAAATTGTAAGTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 1403 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 1402 GCTCTAACCAACTGAGCTAATGGGCC 1377 >seq118165 Length=1890 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| | || ||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1647 AAAAATTGTAAGTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 1588 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 1587 GCTCTAACCAACTGAGCTAATGGGCC 1562 >seq123876 Length=1575 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 434 AAGTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 493 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 494 AACTGAGCTAATGGGCC 510 >seq85902 Length=1240 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1196 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1137 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 1136 TGAGCTAATGGGCC 1123 >seq76861 Length=2054 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1808 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1867 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 1868 TGAGCTAATGGGCC 1881 >seq44623 Length=1807 Score = 109 bits (120), Expect = 3e-19 Identities = 87/103 (84%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 11428 GAAATATAGAATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 |||| ||||| || |||| || || ||||||||| |||||||||| ||||||| Sbjct 561 GAAAAGTAGAA--AAAAAAAGATTAACCATGGCCCATGGGGGGATCGAACCCACGACCTT 504 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| |||||||||||||||||||| Sbjct 503 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 461 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260941771115476