Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq6671 118 9e-22 seq169730 105 6e-18 >seq6671 Length=4556 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||||||||| | ||| |||||||| || | || || ||| || ||| | Sbjct 3738 CGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGACAATGTGCGACCA 3679 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| || || || | ||||| || | || || ||||| ||||||||||||||| Sbjct 3678 TCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGAATACCTTCTTTG 3619 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| || || || | | |||||||| | ||||| || | ||||| Sbjct 3618 TCTTGGATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGCTCGACTTCCAAGGTGATT 3559 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || |||||||||||||| ||||| Sbjct 3558 GTCTTACCAGTGAGTGTTTTCACAAAGATTTGCAT 3524 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| |||||||| | |||||| || || || | || || ||| || || | Sbjct 3966 CGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAAGGTACGCCCA 3907 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||| || || ||||||| || | ||||| ||||||||||||||||| ||| Sbjct 3906 TCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTG 3847 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||||| ||| | | ||||| | | ||||| || | |||||| Sbjct 3846 TCTTGAATCTTGGCCTTCACGTTCTCAATGGTGTCTGATGGCTCGACCTCCAAGGTGATG 3787 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || || | ||| || || ||||||||||||| Sbjct 3786 GTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCATGC 3750 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| |||||||| | |||||| || || || | || || ||| || || | Sbjct 4422 CGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAAGGTACGCCCA 4363 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||| || || ||||||| || | ||||| ||||||||||||||||| ||| Sbjct 4362 TCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTG 4303 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || |||||||| | | ||||| | | ||||| || | |||||| Sbjct 4302 TCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGCTCGACCTCCAAGGTGATG 4243 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || || | ||| || || ||||||||||||| Sbjct 4242 GTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCATGC 4206 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||||||||| | ||| |||||||| || | || || ||| || ||| | Sbjct 4194 CGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGACAATGTGCGACCA 4135 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| || || || | ||||| || | || || ||||| ||||||||||| ||| Sbjct 4134 TCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGAATACCTTCCTTG 4075 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || |||||||| | | ||||| | | ||||| || | |||||| Sbjct 4074 TCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGTTCGACCTCCAAGGTGATG 4015 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || || | ||| || || ||||||||||||| Sbjct 4014 GTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCATGC 3978 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 |||| ||||||||||||||||| ||||| | ||||| ||||| ||| ||| ||| | Sbjct 4556 GCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTGGCCTTCACGTTCTCGATAGTAT 4497 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | | ||||| || | ||||||||||| || || | ||| || || |||||||||| Sbjct 4496 CGGATGGCTCGACCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCA 4437 Query 95007 TGC 95009 ||| Sbjct 4436 TGC 4434 >seq169730 Length=1905 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||||| || |||| || || | || |||||||||||||| || ||||| Sbjct 1900 ATCTTCCAATTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATTCCCTCTTT 1841 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || || ||||| ||| ||| |||| | | || || |||| ||||| Sbjct 1840 GTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACCTCAAGAGTGAT 1781 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| || ||||| || || || ||||||||||| Sbjct 1780 GGTTTTGCCCGTAAGGGTCTTTACGAAGATCTGCAT 1745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447325126860360