Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq86282 100 4e-17 >seq86282 Length=5251 Score = 100 bits (110), Expect = 4e-17 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||| | | | || |||||||| || || || || |||||||| || Sbjct 4760 GCTAAGCGCCATCGTAAGGTTTTGCGTGATAACATTCAGGGTATTACTAAGCCAGCCATA 4819 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | || |||||||| |||||||||||| | ||||| ||| | |||||||| | | Sbjct 4820 CGTCGTTTAGCCCGTCGTGGCGGAGTCAAGCGTATATCTGGTTTGATTTATGAAGAAACT 4879 Query 16553 CGTGATGT 16560 || | ||| Sbjct 4880 CGAGGTGT 4887 Score = 100 bits (110), Expect = 4e-17 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 16582 CGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCAT 16641 ||| || | |||||| || |||||| ||||| || || || ||||| |||||| | || Sbjct 4975 CGTCATTCGTGATGCGGTCACCTATACTGAGCATGCAAAGCGCAAGACCGTCACCGCAAT 5034 Query 16642 GGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| |||| || ||||||||||| |||||||||| | || ||||||||| ||||| Sbjct 5035 GGATGTCGTATACGCATTGAAACGCCAAGGCCGTACTCTATACGGTTTTGGAGGTTAA 5092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78917572558893