Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq2292 179 7e-41 seq48378 150 4e-32 seq96682 127 4e-25 seq141130 113 9e-21 seq135641 100 6e-17 seq32886 100 6e-17 seq2849 95.1 2e-15 seq56136 91.5 3e-14 >seq2292 Length=6207 Score = 179 bits (198), Expect = 7e-41 Identities = 322/468 (69%), Gaps = 2/468 (0%) Strand=Plus/Minus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||| ||| | ||||||||| |||| ||| |||||||| || ||| | | | ||| Sbjct 2607 ACATTATCGTTATAAATATGTTTCAAATTTATTTCATCCTGCTTGAAAATAATTATAAAA 2548 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 || |||||||| | || | || || ||||| |||||||| |||||||| |||||||| Sbjct 2547 TTAGCATTATCACGTATTAAATGTTTCGGTATACGTGTATATGTTTGACAAAGATAGAAA 2488 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 || |||| ||| || || || ||||| || ||| | ||| || | || |||||||||| Sbjct 2487 CTATCAATATCTTTATGACGTCCCATACAAAAATATGCTCGAATATTATTCTGTTTTTCA 2428 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTCAGGCTTGATTACA 7524 |||||||| || || |||||||| | || || || ||||| | || | |||||| Sbjct 2427 CAAGCAACGTCATCGAATATCATTATTGAATTTCTTTTCGCATCATTGGGTTGAATTACA 2368 Query 7525 GCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTG-TTTAAGCAGTGTCTC 7583 ||||| || || | ||| | || || || | || ||| ||||| ||| | || Sbjct 2367 TTTTCATTATCAGAAAAAGCAAAGTAACCCATTCCTTTAA-CTGATTTAATTAGTTTTTC 2309 Query 7584 CAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAACCT 7643 | | ||||| || ||||| | || || || || |||| || | ||| ||||| | Sbjct 2308 TAAATATTGATATTTCGGTTGATAGAGTGATTTGGAATAAATGTAAACATTTTCAAATTT 2249 Query 7644 CAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGATGG 7703 || || |||||| |||| | |||| |||| || || ||||| |||||||| Sbjct 2248 TAATCCATTTGGACTCTCAATCATGCTGAGCATCACATTTGTTTTGCCACAATTTGATGG 2189 Query 7704 CCCGCAAAACACTGCATGGATACTGTTGGGAAGTAAAGCACCGTGTCG 7751 ||| || | || | | | || || || |||||||| ||||| Sbjct 2188 TCCGACAATTAAACCACGTAATGTATTTGGTAGCAAAGCACCATGTCG 2141 >seq48378 Length=7387 Score = 150 bits (166), Expect = 4e-32 Identities = 222/312 (71%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 7296 ATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAGTTTGCATTATC 7355 ||||||||| |||| ||| |||||||| || ||| | | | ||| || |||||||| Sbjct 7248 ATAAATATGTTTCAAATTTATTTCATCCTGCTTGAAAATAATTATAAAATTAGCATTATC 7189 Query 7356 TCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAGCTGTCAACATC 7415 | || | || || ||||| |||||||| |||||||| |||||||| || |||| ||| Sbjct 7188 ACGTATTAAATGTTTCGGTATACGTGTATATGTTTGACAAAGATAGAAACTATCAATATC 7129 Query 7416 CTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCACAAGCAACATC 7475 || || || ||||| || ||| | ||| || | || |||||||||||||||||| || Sbjct 7128 TTTATGACGTCCCATACAAAAATATGCTCGAATATTATTCTGTTTTTCACAAGCAACGTC 7069 Query 7476 GTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTCAGGCTTGATTACAGCTTCATGTTC 7535 || |||||||| | || || || ||||| | || | |||||| ||||| || Sbjct 7068 ATCGAATATCATTATTGAATTTCTTTTCGCATCATTGGGTTGAATTACATTTTCATTATC 7009 Query 7536 GCTGAATGTGAAGAATCCAATACCATCAATCTG-TTTAAGCAGTGTCTCCAGGAACTGAT 7594 || | ||| | || || || | || ||| ||||| ||| | || | | |||| Sbjct 7008 AGAAAAAGCAAAGTAACCCATTCCTTTAA-CTGATTTAATTAGTTTTTCTAAATATTGAT 6950 Query 7595 ACTTTGGTTGGT 7606 | |||||||||| Sbjct 6949 ATTTTGGTTGGT 6938 >seq96682 Length=1209 Score = 127 bits (140), Expect = 4e-25 Identities = 284/421 (67%), Gaps = 4/421 (1%) Strand=Plus/Plus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 || ||||| | ||||||||| || | ||| | | |||| || ||| | | ||||| Sbjct 346 ACGTGATCGTTATAAATATGTTTTAAATTTAATCCATCCTGCTTGAAAATAATTAGAAAA 405 Query 7345 TTTGCATTATCTC-TAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAA 7403 || ||||||| | || ||| | || ||||| ||| |||| | |||||| |||||||| Sbjct 406 TTAGCATTATTACGTATTCAA-TATTTCGGTATACGTATATATGATTGACAAAGATAGAA 464 Query 7404 GCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTC 7463 || |||| | || | || ||||| || ||| | ||| || | || ||||||||| Sbjct 465 ACTATCAATAATTTTATTACGTCCCATACAAAAATATGCTCGAATATTATTCTGTTTTTC 524 Query 7464 ACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTCAGGCTTGATTAC 7523 ||||||||| || || |||||||| | || || || ||||| | || | ||||| Sbjct 525 ACAAGCAACGTCATCGAATATCATTATTGAATTTCTTTTCGCATCATTGGGTTGAATTAC 584 Query 7524 AGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTG-TTTAAGCAGTGTCT 7582 | ||||| || || | ||| | || || || | || ||| ||||| ||| | | Sbjct 585 ATTTTCATTATCAGAAAAAGCAAAGTAACCCATTCCTTTAA-CTGATTTAATTAGTTTTT 643 Query 7583 CCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAACC 7642 | | | ||||| || ||||| | || || || || |||| || | ||| ||||| Sbjct 644 CTAAATATTGATATTTCGGTTGATAGAGTGATTTGGAATAAATGTAAACATTTTCAAATT 703 Query 7643 TCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGATG 7702 | || || |||||| |||| | |||| |||| | || ||||| ||||||| Sbjct 704 TTAATCCATTTGGACTCTCAATCATGCTGAGCATCACATTTATTTTGCCACAATTTGATG 763 Query 7703 G 7703 | Sbjct 764 G 764 >seq141130 Length=4794 Score = 113 bits (124), Expect = 9e-21 Identities = 342/521 (66%), Gaps = 28/521 (5%) Strand=Plus/Plus Query 7201 TCTTTATCTATTACCACAAATCCATATTT---ATTCCAACATGCCGAGCATAAATCTCTG 7257 ||||||| |||||| | |||||||||||| |||||||||||| | | |||| | | Sbjct 4187 TCTTTATTTATTACAAGAAATCCATATTTACCATTCCAACATGC--AATACAAATTTTTA 4244 Query 7258 AATGA--GTTGTATGGCATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCA 7315 || | | | | | ||| || || || ||||||| || |||| ||||| ||||| Sbjct 4245 AAAAATTGCTAAACGACATATCTCCGTTAACGTGATCAT--TAGATATCCTTCAAATTCA 4302 Query 7316 TTTCATCTTGACGGAACAGCACGAGAAAGTTTGCATTATCTCTAATC--AGGTGCTTGGG 7373 || |||| || ||| | | | || |||||||| |||| ||| | || ||||| Sbjct 4303 TTACATCCTGTTCGAATGGAATAATTAAATTTGCATTTCCTCTTATCAAATGTTTTTGGG 4362 Query 7374 TATTCGTGTATAAGTTTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCA 7433 | || ||||| |||||||| |||||||| | |||| || || |||| ||||| Sbjct 4363 T-TTTTCGTATATGTTTGACATAGATAGAACCAATCAATATATTTATGTCTTCCCAT--- 4418 Query 7434 GAAAAAAG----CTTTGATGTGATCCTGTTTTTCA----CAAGCAACATCGTCAAATATC 7485 ||||||| || ||| | | ||| ||| ||| | || |||||||| Sbjct 4419 -AAAAAAGTAGTCTCGGAT----TGCACTTTATCAATCGCAAATTAAATGATCAAATATA 4473 Query 7486 ATCAAGGAGTTAGGCTTAGCATCTTCAGGCTTGATTACAGCTTCATGTTCGCTGAATGTG 7545 | | |||| || ||| | | |||| ||||| | ||||| ||| | || | Sbjct 4474 AATATTGAGTAAGATTTAACTTTATCAGAACCTATTACCGTTTCATTTTCCATTTATTTA 4533 Query 7546 AAGAATCCAATACCATCAATCTGTTTAAGCAGTGTCTCCAGGAACTGATACTTTGGTTGG 7605 || | | ||||||| ||| |||||| ||| ||| | | ||| ||||| || Sbjct 4534 AAAAGTTTGATACCATTAATGGGTTTAATTAGTTTCTTAAAATCCCAATATTTTGGGTGA 4593 Query 7606 TTAAGAGACTTTGAGTAAAGATATATATTCTCAAACCTCAAACCGTTTGGATGTACAATA 7665 | ||||| ||||| |||| ||| ||||| | ||| | | | | || | | |||| Sbjct 4594 TATAGAGATTTTGAATAAATATAAATATTTTTAAATTTAACATCATTGGTCCTTTCAATT 4653 Query 7666 AGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGATGGCCC 7706 | | |||| | | || || || |||||||||||||| || Sbjct 4654 AAACTGAGCATAACGTTAGTTTTACCACAGTTTGATGGACC 4694 >seq135641 Length=1640 Score = 100 bits (110), Expect = 6e-17 Identities = 160/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 4471 GATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTA 4530 || |||||| | ||||| ||||| |||| | |||| | |||||| | | | ||||| Sbjct 914 GAAAAAAATCAATATGTCATTCATTATAGAGTTTTGCAGCAATGTCTCAAATATGGTTTG 855 Query 4531 GTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATAT 4590 | | || ||||| || ||| ||| |||| | ||||| ||||| || ||| Sbjct 854 ATATTAAAAAAAATCCATAAAGTATTGCAATTCAACCAATCTCCATGGCTGAAGCAATAC 795 Query 4591 ATCGAT---AAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTT 4647 || ||| || |||| ||| ||| | ||||| ||||| || |||||||||| Sbjct 794 ATTGATTTGAATAATATT-CATA--GAACATCAGCTACAAATGATTTAAAAAAAAACTTA 738 Query 4648 TATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGT 4694 | ||||||||||||||| | |||| |||||| || ||||||||||| Sbjct 737 TTCAAATTAATGAATAATTCTGTTTATGGAAAAACAATGGAGAATGT 691 >seq32886 Length=6164 Score = 100 bits (110), Expect = 6e-17 Identities = 335/512 (65%), Gaps = 17/512 (3%) Strand=Plus/Plus Query 7203 TTTATCTATTACCACAAATCCATATTTA---TTCCAACATGCCGAGCATAAATCTCTGAA 7259 ||||| |||||| | ||||||||||||| |||||| || | | | |||| | | || Sbjct 3540 TTTATTTATTACAAGAAATCCATATTTATCTTTCCAATATTC--ATTAGAAATATTTAAA 3597 Query 7260 TGAGTTGT--ATGGCATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATT 7317 | || | ||| || || || || ||||||| ||| ||||| ||| |||||||| Sbjct 3598 AAATTTTTAAATGAGATTTCTCCGTTAACGTGATCATTATAGATATGTTTCTGATTCATT 3657 Query 7318 TCATCTTGACGGAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATT 7377 |||| || ||| | || | ||||| ||||||| || ||||| || || |||||| Sbjct 3658 ACATCCTGTTTGAATGGAACAATTAAGTTAGCATTATTTCGAATCAAATGTTTTGGTATT 3717 Query 7378 CGTGTATAAGTTTGACAGAGATAGAAGCTGTCAACATCCT-TGTGTCGACCCATGCAGAA 7436 |||||| |||||||| ||| || | ||| ||| | ||||| | ||| | | Sbjct 3718 TTTGTATACGTTTGACATAGA-AGGTGGTGT----ATCTTAGGTGTCTTCTCATATAATA 3772 Query 7437 AAAAGCTTTGATGTGATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAGGAGTT 7496 | | | || | ||||| |||||| ||||| |||| || | | |||| Sbjct 3773 GTAGTCCTGAATCGCACTTTGTTTATCACAAATTACATCATCAAGAATAAATAGTGAGTA 3832 Query 7497 AGGCTTAGCATCTTCAGGCTTGATTACAGCTTCATGTTCGCTGAATGTGAAGAATCC--A 7554 || || | | ||||| ||| | |||| || || || | || || | ||| | Sbjct 3833 CGGTTTGTCTTTATCAGGAGGTATTTCTGCTTAAT-TTTGC-GTATATGTAAAATGCTGG 3890 Query 7555 ATACCATCAATCTGTTTAAGCAGTGTCTCCAGGAACTGATACTTTGGTTGGTTAAGAGAC 7614 ||| | | ||| ||| || ||| ||| || | ||| |||||||| | || || Sbjct 3891 ATAGCTTTAATTGGTTCAATTAGTTTCTTCAAATAACAATATTTTGGTTGATAGAGGGAT 3950 Query 7615 TTTGAGTAAAGATATATATTCTCAAACCTCAAACCGTTTGGATGTACAATAAGAGACAGC 7674 ||||| |||| ||| || || ||||| | | ||| || || |||| | | ||| Sbjct 3951 TTTGAATAAATATACATGTTTTCAAATTTAAGACCATTACGACTCTCAATTAAACTGAGC 4010 Query 7675 AGAGCATTCGTCTTTCCACAGTTTGATGGCCC 7706 | | | || || || ||| |||||||||| || Sbjct 4011 ATAACTTTAGTTTTACCATAGTTTGATGGACC 4042 >seq2849 Length=18155 Score = 95.1 bits (104), Expect = 2e-15 Identities = 155/220 (70%), Gaps = 10/220 (5%) Strand=Plus/Minus Query 7201 TCTTTATCTATTACCACAAATCCATATTTAT---TCCAACATGCCGAGCATAAATCTCTG 7257 ||||||| |||||| | ||| |||||||||| |||||||| | | | || | | | Sbjct 9795 TCTTTATTTATTACAAGAAACCCATATTTATCCTTCCAACATTC--ATTACAATTTTTTA 9738 Query 7258 AATGAGTTGT---ATGGCATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTC 7314 || | |||| | | || || || |||||||||| ||| ||||| |||| |||| Sbjct 9737 AA--AATTGTTAAACGATATATCACCGTTCACATGATCATTATAGATATGTTTCAAATTC 9680 Query 7315 ATTTCATCTTGACGGAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGT 7374 |||||||| || ||| | | || || | |||||||| ||||| || || ||| Sbjct 9679 ATTTCATCCTGTTTGAATGCAATCATTAAATTGGTATTATCTCGAATCAAATGTTTTGGT 9620 Query 7375 ATTCGTGTATAAGTTTGACAGAGATAGAAGCTGTCAACAT 7414 ||| ||||| |||||||| || ||||| | ||||||| Sbjct 9619 ATTTTCGTATACGTTTGACATAGTTAGAAACAATCAACAT 9580 >seq56136 Length=14749 Score = 91.5 bits (100), Expect = 3e-14 Identities = 238/362 (66%), Gaps = 6/362 (2%) Strand=Plus/Plus Query 7342 AAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAG 7401 || || |||||||||| ||||| || || |||||| ||||| |||||||| |||||| Sbjct 6135 AAATTAGCATTATCTCGAATCATATGTTTTGGTATTTTCGTATACGTTTGACATAGATAG 6194 Query 7402 AAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTT 7461 || | |||| || |||| || || || || ||| | || || | ||||| Sbjct 6195 AAACAATCAATATATTTGTCTCTTCCTATACAAAAATAGTCTCGAATCGCACTTTGTTTA 6254 Query 7462 TCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTCAGGCTTGATT 7521 || ||| | | ||| ||||| || || | | ||| ||||| | || || ||| Sbjct 6255 TCGCAAACTAAATCATCAAAAAT----AAATATTGAGGTTTAGCTTTATCCGGAGCAATT 6310 Query 7522 ACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTC 7581 |||||||||| ||| | |||| || | | ||| | ||| ||| || ||| || Sbjct 6311 ACAGCTTCATTTTCTGTACATGTAAAAAGTTTGATATACTTAATTGGTTCAATTAGTTTC 6370 Query 7582 TCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAAC 7641 | || | ||| |||||||| | | ||| ||||| |||| ||| || || | | | Sbjct 6371 TTCAAATAACAATATTTTGGTTGATATAAAGATTTTGAATAAATATAAATGTTTTTAGA- 6429 Query 7642 CTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGAT 7701 | | || ||| || | |||| | | |||| | | || || | ||||| |||||| Sbjct 6430 -TTTACCCATTTAGACTTTCAATTAAACTGAGCATAACGTTAGTTATACCACAATTTGAT 6488 Query 7702 GG 7703 || Sbjct 6489 GG 6490 Score = 80.6 bits (88), Expect = 5e-11 Identities = 150/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 4482 TTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAA 4541 |||| ||||| | |||| |||| || | |||| | || |||||| || | || | Sbjct 10598 TTATATTATTAATTATAGAAATCTGCAGATATGTCTTCATCATGGTTTAATTTTAAAACA 10539 Query 4542 AATACACCTAGT-CTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAA 4600 || || ||| |||| | || ||||| | ||| | ||| || ||| ||| || Sbjct 10538 GATTCATAGAGTTCTTGCA-TTCAAGCAACGTAATTGGTTAAAAAAATGTATTGATTTAA 10480 Query 4601 ATACCGCATGCCGAAAACTAGC--TAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAAT 4658 ||| |||| | | |||||| ||| ||| | || |||||| | |||| ||| |||| Sbjct 10479 ATAACGCA--CTTAGAACTAGAGGTAAAAATTAATTTGAAAAACAATTTTTCAAACTAAT 10422 Query 4659 GAATAATGCGGTTTTTGGAAAGACGATGGAGAATGT 4694 ||||||||| | || |||||| |||||||| ||||| Sbjct 10421 GAATAATGCTGATTATGGAAAAACGATGGAAAATGT 10386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97773820746154