Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq111999 152 2e-32 seq18725 89.7 2e-13 >seq111999 Length=4320 Score = 152 bits (168), Expect = 2e-32 Identities = 216/301 (72%), Gaps = 2/301 (1%) Strand=Plus/Minus Query 1388 AAATGGCCCATCAAAGCCGACAACTCCAGGCCAGAAACTATCAGCCATATCAAAGGGCAG 1447 || ||| | || |||| ||| ||||| || || ||||| |||||||| | |||| | || Sbjct 3190 AAGTGGGCGATTAAAGGCGATAACTCAAGACCTGAAACAATCAGCCACTT-AAAGCGTAG 3132 Query 1448 -GGATTCAATATCTCAGCTGCTCAGAAATGGCAGGGTAGCGTAGAGGACGGCATCACCTT 1506 || |||||||| | |||| |||||||| ||||| || |||||||| || || Sbjct 3131 AGGGTTCAATATTAGCGGTGCTAAGAAATGGAGTGGTAGTGTTGAGGACGGTATAGTATT 3072 Query 1507 CCTACGTGGATTTAAGAAGATCATCATCCATCCTCGCTGTAAAGAAACGGCGAAAGAGGC 1566 | || || |||||| |||| ||||| ||||| || |||||| | || || |||| || Sbjct 3071 TATTCGAGGCTTTAAGCAGATAATCATTCATCCACGTTGTAAACATACAGCAGAAGAAGC 3012 Query 1567 GCGGCTTTACTCGTACAAAACAGACCGTATCACTGGCGAAGTCTTGCCGATTATCGAGGA 1626 | | | ||| |||||||||||||| || || || ||| | ||||| | || || || Sbjct 3011 GAGATTATACAGTTACAAAACAGACCGCATAACAGGTGAAATATTGCCTGTAATTGAAGA 2952 Query 1627 TAAGAACAACCACTGCTGGGATGGAATCCGGTACGGTCTGGACGGGTATATCAAATGCAA 1686 | ||||| ||||| ||||| | ||| | || || || || || ||||| ||| ||| Sbjct 2951 TGCTAACAATCACTGTTGGGACGCTATCAGATATGGGCTTGATGGCTATATTAAAAACAA 2892 Query 1687 A 1687 | Sbjct 2891 A 2891 Score = 105 bits (116), Expect = 2e-18 Identities = 175/249 (70%), Gaps = 8/249 (3%) Strand=Plus/Minus Query 581 AGTGGAGTTATCCTGTGCGCTCGAGAATACATGAACTCGC-TGGAAGAATCCTCCATGGA 639 || || |||||| | ||||| || ||||||||||| | || | ||||| || ||||| Sbjct 4032 AGCGGTGTTATCTTATGCGCCCGTGAATACATGAA-TAGCTTAGAAGATTCGAGTATGGA 3974 Query 640 GGAGGTAAAGCAGGCAATTCGCTCCGTGGCGTGGCTTGACGATTACTTCGACATTGGAGA 699 || || ||||| || || || || || |||||| | ||||| || || ||||| || Sbjct 3973 AGAAGTCAAGCAAGCTATAAAATCTGTAGCTTGGCTTAATGATTATTTTGAGATTGGCGA 3914 Query 700 GAAATACAT---CAGGACAAAGAACCGCAAGGTCAGCTATGTATTCTGCGGTCTTCGCCA 756 ||| || || || || ||| || || || | ||| | || |||| | | || Sbjct 3913 GAAGTATATACGCACGAAAAATAAGCG---TGTTAATTATATTTTTAGCGGATTAAGACA 3857 Query 757 TAACCTAGACAGCATCAAATCAAAAGCGCGAATTCTTGTAGCCTGGGTTGACGAGGCCGA 816 || || || ||||| ||||||||||| ||||| | | || |||||||||||||| || Sbjct 3856 CAATCTTGATAGCATAAAATCAAAAGCAAGAATTTTAATTGCTTGGGTTGACGAGGCGGA 3797 Query 817 GTCTGTTTC 825 | ||| || Sbjct 3796 GAATGTATC 3788 >seq18725 Length=24047 Score = 89.7 bits (98), Expect = 2e-13 Identities = 168/247 (68%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 32904 CAAGCATTTGCATGGTTCCACTAACGCCAACGATGACTTCGGTAGTGAACCGATTCTGTC 32963 |||||||||| | || ||| ||| || || | || ||| || || | |||| |||| Sbjct 10530 CAAGCATTTGGAGCGTGCCATTAATGCTGACAACGATTTCTGTTGTATAACGATCTTGTC 10471 Query 32964 CACTTTGGTCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAGCCTT 33023 | ||| ||| |||||||||||| | |||| ||||||| |||||| || |||| Sbjct 10470 CGTTTTTATCCGTCCATTTTCTTGTTTGTAATTGACCTTCAATATAAACAAGCGAACCTT 10411 Query 33024 TTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATCACCACACGGTGCCACT 33083 || ||||| | | |||||||| || ||||| || || || | |||||||| | Sbjct 10410 TTTTAAGATATTGACCTGCAATTTCAGCAAGTTTTCCAAAAATAACAATTCGGTGCCATT 10351 Query 33084 CCGTCTGCTCCTTTTGCTCGCCAGTATTTTTATCTCGCCATTGTTCTGACGTAGCTATTG 33143 | || | || | | ||| || || | ||||||| ||| ||| || || || || | Sbjct 10350 CTGTACGATCTTGTGGCTGACCTGTTTGTTTATCTTTCCAAGTTTCCGATGTTGCAATCG 10291 Query 33144 TCAGGTT 33150 | | ||| Sbjct 10290 TTAAGTT 10284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149651395884844