Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq172366 643 1e-179 >seq172366 Length=6938 Score = 643 bits (712), Expect = 1e-179 Identities = 1262/1848 (68%), Gaps = 26/1848 (1%) Strand=Plus/Minus Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAA 62074 || || || ||||| | ||| |||||||| ||||| ||||| || || ||| | || || Sbjct 5154 GCTGGCTTGGTACGCAAATAATACATTCCAGTTTTAAGACC-AGCCTTCCAAGCATAGAA 5096 Query 62075 ATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 62134 ||| || || || || ||| | || ||||| | || || || | || ||||| Sbjct 5095 ATGAATTGAAGTGAGCTTTCCATAGTTGGGTTCTGCAACGTGAATGTTAAACGACTGACT 5036 Query 62135 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTC 62194 |||||| ||||| ||||| || || ||||||||||| || | | || || |||||| Sbjct 5035 TTGATCAATGAAAGCTCCTCTATCAGCAGCCATTTTAATTGTTGATTTAACTGAAATTTC 4976 Query 62195 CCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTGTAT--TCTGAATGG 62250 ||||| || || || || || | ||| || |||| |||| ||| | || || | Sbjct 4975 CCAAACTGTCTTGTATAAGTCTCG-AATGGGTTTAGGAATAGTTTCTATGTTTTGTATAG 4917 Query 62251 ATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62310 | |||| | || ||||| |||||| || | |||| |||||||| ||||| | Sbjct 4916 AACCACGACTTGATATAATTTGATTCTTCATATTGTCATCCCATAATTCGAGTTCGGTAA 4857 Query 62311 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 62370 | |||| || || || ||||||| ||||||||||| ||||| || || | || |||| Sbjct 4856 GATCTCTGAGAAGGTGATGATTAACAACTTGAAATTCACCAGATAAAACACGCCTTGTGT 4797 Query 62371 AAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62430 | |||||| |||||||||||| | || ||||||||||| | ||||||||| || |||| Sbjct 4796 ATATATTAGAGGTATACGGTTCAAAGGATTCATTATTTCCTAGAATTTGAGCTGTAGATG 4737 Query 62431 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGA--TTTTATC 62488 | || |||||||| || || | |||| ||| | | ||| ||||| || |||| || Sbjct 4736 CTGTAGGCATAGGAGCAACAAGTAAAGAATTCCGTACACC--ATGTTTGGAAATTTTCTC 4679 Query 62489 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 62548 || | || | ||||| ||| | || | ||| ||| ||| | Sbjct 4678 CTTCAAAGCATTCCAATCCCACAAGTCTGTTGGTGTAACGTCCCACATGTCGTATTGCAA 4619 Query 62549 AATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTA 62607 | ||||| || | | || ||| |||||| || || || ||| | | || |||| Sbjct 4618 TACCCCGTTGCTTACAGGACTC-CCTTCATATGATTCATAAGGCCCTAACATTTCCGCTA 4560 Query 62608 GTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT 62667 ||| || || ||||||||||| || || || || ||||| || || | |||||| Sbjct 4559 ATTCGCAGCTAGCCTCTAATGCCCCATAGTAGATTGTTTCAAATATTTGGATATTTAATA 4500 Query 62668 CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTT 62727 | ||||| | || ||| |||| ||| | || || | || || || || || | Sbjct 4499 AATATGCTTGCTCACTTTCATATGGGTAACGCATCAGTATTAGTGCATCAGCGAAGCCCT 4440 Query 62728 GAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGAT 62787 |||| ||||| || || |||| ||||||| |||| || | | |||||| |||| ||||| Sbjct 4439 GAACCCCAATTCCTATGGGTCGATGTCTCATATTTGATTTCTTAGCTTCGGGAAGAGGAT 4380 Query 62788 AATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCA 62847 ||||||| |||||||| |||||||| | |||| | || | ||| || || || | Sbjct 4379 AATAATTGATATCTATGATTTTATTCAAATTTTTTGTAACTGTTTTTGTAACTTCTTTAA 4320 Query 62848 GTTTGAGAAAATCAAATCGCCCAT---CTATTACAAACATGTTCAAGGCAACAGATGCCA 62904 | || |||| ||||| | || | ||||||||||| | |||| ||| |||| Sbjct 4319 GCTTTTGAAAGTCAAAAATCTTATTAGCAGAAACAAACATGTTTAGAGCAATAGACGCCA 4260 Query 62905 GATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTAC 62964 | |||||||| |||| ||| | | | | ||||| || || || ||||| | ||| | Sbjct 4259 GGTTACAAACAGCTATCTCGTCCGGTGCTGAATATTCTACAATTTCTGTGCACAAATTGC 4200 Query 62965 TACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 63024 | || || || ||||| | ||||| ||| ||||| ||| |||| || | ||||||||| | Sbjct 4199 TGCATTTAATGGTTCCAACATTTTTTTGGTTACTTTTTCTGTTGCAAGAATCCTTATATA 4140 Query 63025 GAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC-GACTCGA 63083 || | || || |||||||||| || | ||| || || || ||| | |||| || Sbjct 4139 ACATATAAGGTGTTCCAGTTTCAACTTGTGCTTCAATGATAGCAAACCACAGTGACT-GA 4081 Query 63084 GCCTTTATTATAG-ATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAA 63142 || || ||| | ||| | | |||| || |||| ||| | |||||| || || Sbjct 4080 GCTTTAATTTTTCTATTAGCACGGCCTT-CTTTTTCATATTTTTCATACAACTTCTCAAA 4022 Query 63143 CTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTC 63202 || |||||||||| | || | || || |||| || |||||||| | ||||| || Sbjct 4021 TTCTTCTCCCCAAAGTTCATCAAGCCCGGGGCATTTATGGGGACACATTAGTGACCAGTC 3962 Query 63203 TCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 63262 ||| ||| | || ||||||||||| |||||||||||||| ||||| ||||| || Sbjct 3961 TCCATCAGATTCTACGCGTTTCATAAAAAGATCAGGAATCCAGAGAGCGTAAAATAAGTC 3902 Query 63263 TCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 63322 | | || ||||| || ||||||||||| ||||| | || | ||| | | |||||| Sbjct 3901 ACGCGCCCTGTGTTCATCTTTTCCTGTATTTTTTTTCAAGTCTAAAAACTCGAAAATATC 3842 Query 63323 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATC 63382 |||||||| || ||||| || || || | | || |||| ||| || || || || Sbjct 3841 TGAATGCCAAGGCTCCAAATAAATAGCGAACGCGCCGGGCCTTTTTCCGCCACCTTGGTC 3782 Query 63383 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACC 63442 || || | || |||||| ||||||||||||| || | | ||| |||||| | || Sbjct 3781 TACATAACGTGCTACATTATTAAAAACTCTCAACATAGGCACTAAACCATTTGATGTTCC 3722 Query 63443 ATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA--ATTGATAGACCTATT 63500 ||| |||||| | ||| | |||| | || |||||| | | |||||| || ||| Sbjct 3721 ATTAGTACCGCATATAGATGTTCCTTTAGCTCGAATACAATGAACATTGAT--TCCAATT 3664 Query 63501 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATG 63560 || || || ||| || || | ||| ||| ||| || | | | || || || ||| Sbjct 3663 CCTCCAGCTGATTTCGAAATCATTGCACATTGTTCTACAGATTTGAAAATTCCTTCAATG 3604 Query 63561 CTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 63620 ||| | | ||| |||| | |||||| |||| ||| | | || ||| | ||| Sbjct 3603 GAATCTGCTACCATTGTAAGCAAAAAACAAGATGACAGTTGTGGCCTTCTTGTTGCAGCA 3544 Query 63621 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 63680 |||||| || |||||||| || ||||| ||||||||||||| | |||||| || ||| Sbjct 3543 GCAAATAAAGTTGGAGAAGCATGGGTAAAGTATTTTTCAGAAAGCAAATTGTATGTTTCA 3484 Query 63681 ATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 63739 || || | || || || || | || ||||| |||| || | ||| ||||| ||||| Sbjct 3483 ATGGCAGCATCGATGTCTTCACCG-TGTATTCCAACTGATACTCTCATCAACATATGCTG 3425 Query 63740 AGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAA 63799 ||||| || || | || || | ||| | ||| || || ||| | ||| ||||| Sbjct 3424 TGGTCTCTCTACAACTTTACCTTTAACTTTAAGCAAATATGAACGTTCAAGAGTCTTAAA 3365 Query 63800 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63847 ||||| || |||||| ||| || || || || || || |||| || Sbjct 3364 GCCAAAGTAATTGTATCCAAAATCACGGTCATATATGATTGCCGAATT 3317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621604740997160