Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq6510 100 3e-16 >seq6510 Length=41289 Score = 100 bits (110), Expect = 3e-16 Identities = 466/724 (64%), Gaps = 28/724 (4%) Strand=Plus/Minus Query 6461 GGTTGAAGAGCTTCACCGAAGCAAATAGCCTTTGCCGCGATAACATGCATTAACGGACCA 6520 ||||||||||| || || | ||| || || || || || |||||||| |||||| Sbjct 17459 GGTTGAAGAGCCTCTAAAAATGCAGCAGCTTTAGCTGCAATTACGTGCATTAAAGGACCA 17400 Query 6521 CCCTGAATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCAT---CGTTA 6577 || |||||||| |||||||| || ||||||| ||| || | || |||| || ||| Sbjct 17399 CCTTGAATACCTGGGAAGATTGCTGAATTTAATTTTTTCTCAATTTCAGGATTACTTTTA 17340 Query 6578 GTAAGAATGAGACCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGAAGTAACAACG 6637 | | ||| | ||| || | ||||| | || ||||||||||| || | || ||||| Sbjct 17339 GCTAAAATTAAACCGCCTCTTGGGCCTCTTAATGTTTTATGAGTAGTTGTTGTTACAACA 17280 Query 6638 TCAGCACCCCATTTGAGTGGATTAGCATGAAGTTTTGATGCGACGAATCCAGCAAAGTGG 6697 |||||| | |||||||| | | | | || || || || || | || Sbjct 17279 TCAGCA---TAAGGCAGTGGATTTGGGTATAAACCAGCGGCAACTAAACCTGCGACATGC 17223 Query 6698 GCCATATCGACCATCAACTTCGCGCCAGACATATCAGCAATGCTG-CGAAGTGCTGAATA 6756 |||||||| || | || | |||||| |||||||||| ||| | || | | || Sbjct 17222 GCCATATCAACAAATAAATAAGCGCCAACGCTATCAGCAAT-CTGTCTAAAT--TTCTTA 17166 Query 6757 ATCCATCTCATCTAATTGGTGGACGAAGGCTGAATAACCAACGACAATCAATTTGAGATT 6816 | |||| | || | || | | |||||| ||||| | | |||| |||| || || Sbjct 17165 A--AATCTAA---AACTCTTGAA--TAAGCTGAAAAACCAGCAATAATC-ATTTTAGGTT 17114 Query 6817 CGGGATAGATTTAGCGATTTCGC-GAATTTTGAAAAGATCCAAATGACCGTAGGCATCGA 6875 | | ||||| | ||| ||| || | | ||| | |||| | |||| | Sbjct 17113 TATGTT--CATTAGCTA-AACGCTGAACTTCGTCATAATCAATTAGACCATTTTCATCAA 17057 Query 6876 CACCGTAATGATGGAAGTCGTAATTGCGGCCTGACGCATTTGCTTTATGCCCATGTGTTA 6935 | || || ||| | | ||| | |||||| | |||| ||||| |||| Sbjct 17056 CGCCATATTGAACAGAATTGTATGTTTTGCCTGAGAAGCTAACTTTCGCACCATGAGTTA 16997 Query 6936 AATGACCACCGCAATCCAAAGACATCGCCAATACTGAATCGCCTGGACTCAGCAACGCAT 6995 ||||||| ||| ||| || ||| | || || | ||| || | | | ||| Sbjct 16996 AATGACCGCCGTGATCTAAGCTCATACCTAAAACAGTATCATTTGCATCTAATAGTGCAA 16937 Query 6996 GGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGCGAAATTGCAAC 7055 | ||||||||| ||||| ||||| || || || || ||||| ||||| ||| | Sbjct 16936 GATAAACAGCTGCATTTGCTTGTGAGCCTGAGTGAGGCTGAACATTTGCATAATCAGCGC 16877 Query 7056 TAAACAGTTCTTTAGCACGCTCAATTGC--CAGGTTCT-CGATCTCATCGGCTTTTACAC 7112 ||| |||||||| || | | ||||| | |||| |||| ||| || | | | | Sbjct 16876 CAAAAAGTTCTTTGGCTCTAGCGATTGCTAAATCTTCTACGATATCAACG---TATTCGC 16820 Query 7113 AACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAAC 7172 |||| || ||||| ||||| ||||| || || ||||| ||||| || | ||||| Sbjct 16819 AACCACCATAATAACGTTTATGAGGATAACCTTCTGCATATTTGTTAGTTAGCTGAGAAC 16760 Query 7173 CTTG 7176 |||| Sbjct 16759 CTTG 16756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552161116075080