Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq6671 96.9 3e-15 seq5352 91.5 1e-13 >seq6671 Length=4556 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 |||||||||| | ||||| |||||| | ||||| || | || ||| | ||||||||| | Sbjct 3520 CAAAATGCAAATCTTTGTGAAAACACTCACTGGTAAGACAATCACCTTGGAAGTCGAG-C 3578 Query 24047 CAAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105 || | ||||| || || | || ||| || || ||||||||||| || || || | Sbjct 3579 CATCTGACACTATTGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAG 3638 Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATT 24165 | |||||| | |||| | || ||||||||| | ||||||| | | | ||| | Sbjct 3639 ACCAACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACT 3698 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 | || || || || ||||| || |||| || ||||| Sbjct 3699 ACAATATCCAGAAGGAATCCACTCTTCACTTGGTGTT 3735 >seq5352 Length=5729 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 101017 GGCTTACACGGCTTTCATGTTCACGAATTCGGCGACACAAGCAACGGCTGCACGTCTGCG 101076 |||||||| ||||| ||||| |||||||| ||||| | | |||||||||||| || || Sbjct 3295 GGCTTACATGGCTTCCATGTGCACGAATTTGGCGATAATACCAACGGCTGCACATCGGCC 3236 Query 101077 GGCGAACATTTTAACCCTACGGGCATGGCTCACGGCGCACCCAACTCTGCCGTTCGTCAC 101136 || |||||| || || ||||| | || |||||||| ||| | ||||||| Sbjct 3235 GGTCCACATTTCAATCCCGAGGGCAAAGAACATGGCGCACCGAACGACGAGAATCGTCAC 3176 Query 101137 GTCGGTGATCTTGGCAATATTGATGCTA 101164 | || ||| | || |||||||| |||| Sbjct 3175 TTGGGCGATTTAGGTAATATTGAAGCTA 3148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429032645482155