Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq172366 163 3e-35 seq6671 125 7e-24 >seq172366 Length=6938 Score = 163 bits (180), Expect = 3e-35 Identities = 620/959 (65%), Gaps = 27/959 (3%) Strand=Plus/Minus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114 ||||| || || ||||| || || | || ||||| | || | ||||| || | Sbjct 4839 TGATTAACAACTTGAAATTCACCAGATAAAACACGCCTTGTGTATATATTAGAGGTATAC 4780 Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174 |||||||| || || ||||| || || |||||||| || | ||| || ||||| || Sbjct 4779 GGTTCAAAGGATTCATTATTTCCTAGAATTTGAGCTGTAGATGCTGTAGGCATAGGAGCA 4720 Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234 || | ||| ||||| || | || || || || | ||||| | | | ||||||| Sbjct 4719 ACAAGTAAAGAATTCCGTACACCATGTTTGGAAATTTTCTCCTTCAAAGCATTCCAATCC 4660 Query 145235 CATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGG 145294 || | || || | ||||||||||||||||| ||||| | || | ||| | || Sbjct 4659 CACAAGTCTGTTGGTGTAACGTCCCACATGTCGTATTGCAATACCCCGTTGCTTACAGGA 4600 Query 145295 CTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG-GCGAGCTCGCAACTCGCCTCCAG 145353 || |||| | | || ||| |||| || ||| || | ||||| || ||||| | Sbjct 4599 CTCCCTTCATATGATTCATAAG-GCCCTAACATTTCCGCTAATTCGCAGCTAGCCTCTAA 4541 Query 145354 AGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTC 145413 || || | || ||||| || ||||| | || | | |||| || || || Sbjct 4540 TGCCCCATAGTAGATTGTTTCAAATATTTGGATATTTAATAAATATGCTTGCTCACTTTC 4481 Query 145414 GTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGG 145473 || || |||| ||||| | ||||| |||| ||||| | || | || ||||| Sbjct 4480 ATATGGGTAACGCATCAGTATTAGTGCATCAGCGAAGCCCTGAACCCCAATTCCTATGGG 4421 Query 145474 CCGATGTTTCATGTTGCTCATCCTCGCCGACTCG---ATAGGATATCGATTACGGTCGAT 145530 |||||| |||| || || | || ||| | |||||| ||| || || Sbjct 4420 TCGATGTCTCATATTTGATTTCTTAGCT---TCGGGAAGAGGATAATAATTGATATCTAT 4364 Query 145531 AATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAA 145590 ||||||||||| ||| ||| ||||||| | | ||||| ||||||||| Sbjct 4363 GATTTTATTCAAATTTTTTGTAACTGTTTTTGTAACTTCTTTAAGCTTTTGAAAGTCAAA 4304 Query 145591 CCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGC 145650 | || | | | ||| | | || | || || ||||||| |||||||| || Sbjct 4303 ---AATCTTATTAGCAGAAACAAACATGTTTAGAGCAATAGACGCCAGGTTACAAACAGC 4247 Query 145651 CGTCTCCTCGGCGTCGCTG--TATTGTACGATCTCGGCGCACAAATTGCTACATTTGATG 145708 |||| || | || |||| |||| ||| || || | |||||||||||| ||||| ||| Sbjct 4246 TATCTCGTCCG-GT-GCTGAATATTCTACAATTTCTGTGCACAAATTGCTGCATTTAATG 4189 Query 145709 GTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGT 145768 ||||| | ||||| || |||||||| |||||||| | ||||| || | ||| || ||| Sbjct 4188 GTTCCAACATTTTTTTGGTTACTTTTTCTGTTGCAAGAATCCTTATATAACATATAAGGT 4129 Query 145769 CCGCCAGTCTCCACCTGCGTCTCCACGATA--AAACGGTGCA-AGT-CCTGCGCACGCAC 145824 ||||| || || || | || | |||| |||| || ||| ||| || | Sbjct 4128 GTTCCAGTTTCAACTTGTGCTTCAATGATAGCAAAC----CACAGTGACTGAGCTTTAA- 4074 Query 145825 CTGCTGCTGGTAG--CGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAA 145882 | | || ||| ||||| |||| ||| ||||| || | || |||||| | Sbjct 4073 -TTTTTCTATTAGCACGGCCTTCTTTTTCATATTTTTCATACAACTTCTCAAATTCTTCT 4015 Query 145883 CCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTG 145942 || | || || ||||| || || | ||||||||| || ||||| | || | Sbjct 4014 CCCCAAAGTTCATCAAGCCCGGGGCATTTATGGGGACACATTAGTGACCAGTCTCCATCA 3955 Query 145943 GCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGC 146001 | | ||||| | |||||| | ||| || | ||| || ||||| | ||||| ||||| Sbjct 3954 GATTCTACGCGTTTCATAAAAAGATCAGGAATCCAGAGAGCGTAAAATAAGTCACGCGC 3896 >seq6671 Length=4556 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | ||||| || || || | || ||||| || || || ||||| ||| Sbjct 4435 GCCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGA 4376 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| ||| || || | ||||||||| || |||| |||||||||||||| ||||| Sbjct 4375 CAAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 4316 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| || || ||||| | ||| | || || | | ||||| Sbjct 4315 AATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGCTCGAC 4256 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | |||||| ||||| | ||| || ||||| ||||||||| Sbjct 4255 CTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCATG 4207 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | ||||| || || || | || ||||| || || || ||||| ||| Sbjct 3979 GCCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGA 3920 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| ||| || || | ||||||||| || |||| |||||||||||||| ||||| Sbjct 3919 CAAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 3860 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| || || ||| | | ||| | || || | | ||||| Sbjct 3859 AATACCTTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCAATGGTGTCTGATGGCTCGAC 3800 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | |||||| ||||| | ||| || ||||| ||||||||| Sbjct 3799 CTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCATG 3751 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | ||||| ||| || || | || || ||||| || || ||||| ||| Sbjct 3751 GCCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGA 3692 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| || || | |||||||| ||| |||| |||||||| ||||| || || Sbjct 3691 CAATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGG 3632 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 || ||||||||||| |||||| |||| | | | || | ||| || | | ||||| Sbjct 3631 AATACCTTCTTTGTCTTGGATTTT-AGCTTTAACATTTTCAATAGTGTCAGATGGCTCGA 3573 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || ||||| || || ||||| || || || ||||| Sbjct 3572 CTTCCAAGGTGATTGTCTTACCAGTGAGTGTTTTCACAAAGATTTGCAT 3524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470995606515840