Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq147390 129 4e-25 seq6671 105 4e-18 >seq147390 Length=2266 Score = 129 bits (142), Expect = 4e-25 Identities = 202/287 (70%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 |||||||| ||||| || ||||| ||||| || | ||| ||||||||| |||| ||| Sbjct 2028 AACGAGCGTTTCATTGTGAACGGCTCGCACGACGCATGCAAACTGCAGGACCTACTCGAC 1969 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 |||||||| |||||||| || |||||| ||||||||||| || |||||||| | | Sbjct 1968 GGCTTTATACGCAAGTTCGTATTGTGTCCCGAATGCGATAATCCCGAGACCGATTTAACC 1909 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 || || | |||| | || || || ||| ||||| || ||||| | |||||| | Sbjct 1908 GTTTCGGCAAAGAATCAGACAATTTCGCAGTCGTGCAAGGCATGCGGCTTCCATGGGCTG 1849 Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA--CCTAAAGACC 6612 || | | ||||| | || || ||||| |||||||||| ||| | | || | Sbjct 1848 CTCAAGGTCAACCACAAGGTGAATACGTTCATTTTGAAGAATCCGCCAACCGTCAATCCG 1789 Query 6613 CTAGCACGCAGGGTTCTTCGCAAAATAAGAGCAACCGTGGCAAGCGC 6659 ||| |||||||| |||| | | || |||| || ||||||| Sbjct 1788 GCGGCA--CAGGGTTCCTCGCTCACTGAGGGCAAGCGCTCCAAGCGC 1744 >seq6671 Length=4556 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | |||||||||||| ||||||||| ||||| || |||||||| || ||| Sbjct 4206 CCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAC 4147 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || ||||| || || || || || | || ||||| || | || Sbjct 4146 AATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGA 4087 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| ||||| ||| || ||| ||||||| | || ||| ||| || Sbjct 4086 ATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGTTCGACC 4027 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || ||||| || ||||| || || ||||| ||||||||| Sbjct 4026 TCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCATG 3979 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | |||||||||||| ||||||||| ||||| || |||||||| || ||| Sbjct 3750 CCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAC 3691 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || ||||| || || || || || | || ||||| || | || Sbjct 3690 AATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGA 3631 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||| ||||| || ||||| | | ||| || || ||| Sbjct 3630 ATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGCTCGACT 3571 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || || || ||||| || | |||||||| || || ||||| || Sbjct 3570 TCCAAGGTGATTGTCTTACCAGTGAGTGTTTTCACAAAGATTTGCATTTT 3521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334243429982231