Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq172366 634 7e-177 >seq172366 Length=6938 Score = 634 bits (702), Expect = 7e-177 Identities = 1260/1848 (68%), Gaps = 26/1848 (1%) Strand=Plus/Minus Query 61871 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAA 61929 || || || ||||| | ||| |||||||| ||||| ||||| || || ||| | || || Sbjct 5154 GCTGGCTTGGTACGCAAATAATACATTCCAGTTTTAAGACC-AGCCTTCCAAGCATAGAA 5096 Query 61930 ATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 61989 ||| || || || || ||| | || ||||| | || || || | || ||||| Sbjct 5095 ATGAATTGAAGTGAGCTTTCCATAGTTGGGTTCTGCAACGTGAATGTTAAACGACTGACT 5036 Query 61990 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTC 62049 |||||| ||||| ||||| || || ||||||||||| || | | || || |||||| Sbjct 5035 TTGATCAATGAAAGCTCCTCTATCAGCAGCCATTTTAATTGTTGATTTAACTGAAATTTC 4976 Query 62050 CCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTGTAT--TCTGAATGG 62105 ||||| || || || || || | ||| || |||| |||| ||| | || || | Sbjct 4975 CCAAACTGTCTTGTATAAGTCTCG-AATGGGTTTAGGAATAGTTTCTATGTTTTGTATAG 4917 Query 62106 ATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62165 | |||| | || ||||| |||||| || | |||| |||||||| ||||| | Sbjct 4916 AACCACGACTTGATATAATTTGATTCTTCATATTGTCATCCCATAATTCGAGTTCGGTAA 4857 Query 62166 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 62225 | |||| || || || ||||||| ||||||||||| ||||| || || | || |||| Sbjct 4856 GATCTCTGAGAAGGTGATGATTAACAACTTGAAATTCACCAGATAAAACACGCCTTGTGT 4797 Query 62226 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62285 | |||||| |||||||||||| | || ||||||||||| | ||||||||| || |||| Sbjct 4796 ATATATTAGAGGTATACGGTTCAAAGGATTCATTATTTCCTAGAATTTGAGCTGTAGATG 4737 Query 62286 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGA--TTTTATC 62343 | || |||||||| || || | |||| ||| | | ||| ||||| || |||| || Sbjct 4736 CTGTAGGCATAGGAGCAACAAGTAAAGAATTCCGTACACC--ATGTTTGGAAATTTTCTC 4679 Query 62344 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 62403 || | || | ||||| ||| | || | ||| ||| ||| | Sbjct 4678 CTTCAAAGCATTCCAATCCCACAAGTCTGTTGGTGTAACGTCCCACATGTCGTATTGCAA 4619 Query 62404 AATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTA 62462 | ||||| || | | || ||| |||||| || || || ||| | | || |||| Sbjct 4618 TACCCCGTTGCTTACAGGACTC-CCTTCATATGATTCATAAGGCCCTAACATTTCCGCTA 4560 Query 62463 GTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT 62522 ||| || || ||||||||||| || || || || ||||| || || | |||||| Sbjct 4559 ATTCGCAGCTAGCCTCTAATGCCCCATAGTAGATTGTTTCAAATATTTGGATATTTAATA 4500 Query 62523 CTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTT 62582 | |||| | || ||| |||| ||| | || || | || || || || || | Sbjct 4499 AATATGCTTGCTCACTTTCATATGGGTAACGCATCAGTATTAGTGCATCAGCGAAGCCCT 4440 Query 62583 GAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGAT 62642 |||| ||||| || || |||| ||||||| |||| || | | |||||| |||| ||||| Sbjct 4439 GAACCCCAATTCCTATGGGTCGATGTCTCATATTTGATTTCTTAGCTTCGGGAAGAGGAT 4380 Query 62643 AATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCA 62702 ||||||| |||||||| |||||||| | |||| | || | ||| || || || | Sbjct 4379 AATAATTGATATCTATGATTTTATTCAAATTTTTTGTAACTGTTTTTGTAACTTCTTTAA 4320 Query 62703 GTTTGAGAAAATCAAATCGCCCAT---CTATTACAAACATGTTCAATGCAACAGATGCCA 62759 | || |||| ||||| | || | ||||||||||| | |||| ||| |||| Sbjct 4319 GCTTTTGAAAGTCAAAAATCTTATTAGCAGAAACAAACATGTTTAGAGCAATAGACGCCA 4260 Query 62760 GATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTAC 62819 | |||||||| |||| ||| | | | | ||||| || || || ||||| | ||| | Sbjct 4259 GGTTACAAACAGCTATCTCGTCCGGTGCTGAATATTCTACAATTTCTGTGCACAAATTGC 4200 Query 62820 TACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 62879 | || || |||||||| | ||||| ||| ||||| ||| |||| || | ||||||||| | Sbjct 4199 TGCATTTAATGGTTCCAACATTTTTTTGGTTACTTTTTCTGTTGCAAGAATCCTTATATA 4140 Query 62880 GAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC-GACTCGA 62938 || | || || |||||||||| || | ||| || || || ||| | |||| || Sbjct 4139 ACATATAAGGTGTTCCAGTTTCAACTTGTGCTTCAATGATAGCAAACCACAGTGACT-GA 4081 Query 62939 GCCTTTATTATAG-ATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAA 62997 || || ||| | ||| | | | || || |||| ||| | |||||| || || Sbjct 4080 GCTTTAATTTTTCTATTAGCACGGCCTT-CTTTTTCATATTTTTCATACAACTTCTCAAA 4022 Query 62998 CTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTC 63057 || |||||||||| | || || || || |||| || |||||||| | ||||| || Sbjct 4021 TTCTTCTCCCCAAAGTTCATCAAGCCCGGGGCATTTATGGGGACACATTAGTGACCAGTC 3962 Query 63058 TCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 63117 ||| ||| | || ||||||||||| |||||||||||||| ||||| ||||| || Sbjct 3961 TCCATCAGATTCTACGCGTTTCATAAAAAGATCAGGAATCCAGAGAGCGTAAAATAAGTC 3902 Query 63118 TCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 63177 | | || ||||| || ||||||||||| ||||| | || | ||| | | |||||| Sbjct 3901 ACGCGCCCTGTGTTCATCTTTTCCTGTATTTTTTTTCAAGTCTAAAAACTCGAAAATATC 3842 Query 63178 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATC 63237 |||||||| || ||||| || || || | | || |||| ||| || || || || Sbjct 3841 TGAATGCCAAGGCTCCAAATAAATAGCGAACGCGCCGGGCCTTTTTCCGCCACCTTGGTC 3782 Query 63238 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACC 63297 || || | || |||||| ||||||||||||| || | | |||||| ||||| || Sbjct 3781 TACATAACGTGCTACATTATTAAAAACTCTCAACATAGGCACTAAACCATTTGATGTTCC 3722 Query 63298 ATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTA--ATTGATAGACCTATT 63355 ||| || || | ||| | |||| | || |||||| | | |||||| || ||| Sbjct 3721 ATTAGTACCGCATATAGATGTTCCTTTAGCTCGAATACAATGAACATTGAT--TCCAATT 3664 Query 63356 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATA 63415 || || || ||| || || | ||| ||| ||| || | | | || || || || Sbjct 3663 CCTCCAGCTGATTTCGAAATCATTGCACATTGTTCTACAGATTTGAAAATTCCTTCAATG 3604 Query 63416 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 63475 ||| | | ||| |||| | |||||| |||| ||| | | || ||| | ||| Sbjct 3603 GAATCTGCTACCATTGTAAGCAAAAAACAAGATGACAGTTGTGGCCTTCTTGTTGCAGCA 3544 Query 63476 TTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 63535 |||||| || |||||||| || ||||| ||||||||||||| | |||||| || ||| Sbjct 3543 GCAAATAAAGTTGGAGAAGCATGGGTAAAGTATTTTTCAGAAAGCAAATTGTATGTTTCA 3484 Query 63536 ATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 63594 || || | || || || || | || ||||| |||| || | ||| ||||| ||||| Sbjct 3483 ATGGCAGCATCGATGTCTTCACCG-TGTATTCCAACTGATACTCTCATCAACATATGCTG 3425 Query 63595 AGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAA 63654 ||||| || || | || || | ||| | ||| || || ||| | ||| ||||| Sbjct 3424 TGGTCTCTCTACAACTTTACCTTTAACTTTAAGCAAATATGAACGTTCAAGAGTCTTAAA 3365 Query 63655 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63702 ||||| || |||||| ||| || || || || || || |||| || Sbjct 3364 GCCAAAGTAATTGTATCCAAAATCACGGTCATATATGATTGCCGAATT 3317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632266515119600