Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq6671 143 2e-29 seq169730 107 2e-18 seq153791 84.2 2e-11 >seq6671 Length=4556 Score = 143 bits (158), Expect = 2e-29 Identities = 162/214 (76%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || || | || ||||| | ||||| | ||||| ||| | || Sbjct 3523 AATGCAAATCTTTGTGAAAACACTCACTGGTAAGACAATCACCTTGGAAGTCGAGCCATC 3582 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||| || | || |||| |||| || ||||||||||| |||||||| || Sbjct 3583 TGACACTATTGAA--AATGTTAAAGCTAAAATCCAA-GACAAAGAAGGTATTCCACCAGA 3639 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||||| | || || || ||||| ||||| ||||||| |||||| || ||| || Sbjct 3640 CCAACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACTA 3699 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 |||||| || || |||||||| || || || ||| Sbjct 3700 CAATATCCAGAAGGAATCCACTCTTCACTTGGTG 3733 Score = 140 bits (154), Expect = 3e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| ||| ||||||| | || || || | || Sbjct 3980 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAACCATCA 4039 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | ||| | || | ||| ||||| ||||| |||||||| ||||| Sbjct 4040 GACACCATTGAGAATGTCAAGGCCAAGATTCAA-GACAAGGAAGGTATTCCACCAGACCA 4098 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || || ||||| ||||| ||||||| |||||| || ||| ||||| Sbjct 4099 ACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACTACAA 4158 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208 ||| || || |||||||| || || || ||| Sbjct 4159 TATCCAGAAGGAATCCACTCTTCACTTGGTG 4189 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| ||| ||||||| | || || ||| | || Sbjct 3752 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAGCCATCA 3811 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| |||| || || | ||| ||||| ||||| ||||| || ||||| Sbjct 3812 GACACCATTGAGAACGTGAAGGCCAAGATTCA-AGACAAGGAAGGTATTCCTCCAGACCA 3870 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| ||||| || || ||||||| || || || ||| ||||| Sbjct 3871 GCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGTACCTTGTCCGACTACAA 3930 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||| || ||||| || || || || || || Sbjct 3931 TATCCAGAAAGAGTCTACTCTTCACTTGGT 3960 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| ||| ||||||| | || || ||| | || Sbjct 4208 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAGCCATCA 4267 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | || || || | ||| ||||| ||||| ||||| || ||||| Sbjct 4268 GACACCATTGAGAATGTCAAGGCCAAGATTCA-AGACAAGGAAGGTATTCCTCCAGACCA 4326 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| ||||| || || ||||||| || || || ||| ||||| Sbjct 4327 GCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGTACCTTGTCCGACTACAA 4386 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||| || ||||| || || || || || || Sbjct 4387 TATCCAGAAAGAGTCTACTCTTCACTTGGT 4416 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| ||| ||||||| | || || ||| | || Sbjct 4436 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAGCCATCC 4495 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||||||| ||||| |||||| ||||| ||||| ||||| || ||||| Sbjct 4496 GATACTATCGAGAACGTGAAGGCCAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCA 4554 >seq169730 Length=1905 Score = 107 bits (118), Expect = 2e-18 Identities = 124/165 (75%), Gaps = 8/165 (5%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || |||||||| | || || ||| ||||||| | || || ||| | ||| Sbjct 1745 ATGCAGATCTTCGTAAAGACCCTTACGGGCAAAACCATCACTCTTGAGGTTGAGCCCTCT 1804 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||||||| |||| |||| || | ||| |||||||| || ||||| || || Sbjct 1805 GATACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAGGGAATTCCTCCAGA 1860 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 |||||||| | || ||||| ||||||||||| ||||||| ||| Sbjct 1861 TCAACAGCGTTTGATATTTGCTGGCAAACAATTGGAAGATGGTCG 1905 >seq153791 Length=3075 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 25095 AAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGAT 25154 ||||| | ||||| || || |||||||| | | ||||| ||||||||||| |||||| Sbjct 2735 AAAGAGGAAATTCCTCCAGATCAACAGCGTTTGGTATTTGCTGGCAAACAATTGGAAGAT 2676 Query 25155 GATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 | |||||| | ||| || ||||| ||||||||||| || | ||||| ||| Sbjct 2675 GGTCGCACATTCTCCGACTATAATATCCAAAAAGAATCTACTTTGCATTTGGTG 2622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432417518424815