Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq172366 210 2e-49 seq6671 125 6e-24 seq153791 93.3 4e-14 seq76123 87.8 2e-12 >seq172366 Length=6938 Score = 210 bits (232), Expect = 2e-49 Identities = 931/1454 (64%), Gaps = 30/1454 (2%) Strand=Plus/Minus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 || || || ||||||| ||||| | || || |||||||| |||||||| ||||| || Sbjct 5184 TTATCAACAGTAAATTGTATAGCATTAGCGGCTGGCTTGGTACGCAAATAATACATTCCA 5125 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 ||||| | ||| ||||||| | | ||||| | || | | | | ||| ||||| Sbjct 5124 GTTTTAAGACCAGCCTTCCAAGCATAGAAATGAATTGAAGTGAGCTTTCCATAGTTGGGT 5065 Query 128899 TGACTCaaaaa--aaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAG 128956 | || || ||| ||||| || |||||||||||||| || | || | ||| |||| Sbjct 5064 T--CTGCAACGTGAATGTTAAACGACTGACTTTGATCAATGAAAGCTCCTCTATCAGCAG 5007 Query 128957 CCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGT 129016 |||| ||| ||| ||| |||||||| || || ||||| | |||| | | Sbjct 5006 CCATTTTAATTGTTGATTTAACTGAAATTTCCCAAACTGTCTTGTATAAGTCTCGAATGG 4947 Query 129017 GTTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCA 129076 |||| || || ||| ||||| || | || ||| ||||||| || || Sbjct 4946 GTTTAGGAATAGTTTCTATGTTTTGTATAGAACCACGACTTGATATAATTTGATTCTTCA 4887 Query 129077 TCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAA-GTATTTGTTTATTACT 129135 | | || | | || | |||| | | | ||| || | || || | || | ||| Sbjct 4886 TATTGTCATCCCATAATTCGAGTTCGGTAAGATC-TCTGAGAAGGTGATGATTAACAACT 4828 Query 129136 TGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGAT 129195 ||||| ||||| | ||||| |||| ||| || || ||| |||| ||||| ||| Sbjct 4827 TGAAATTCACCAGATAAAACACGCCTTGTGTATATATTAGAGGTATACGGTTCAAAGGAT 4768 Query 129196 TCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGC--CACGCAAAGCG 129253 ||||| || |||| |||||||| || | || || ||||| ||| || | ||| | Sbjct 4767 TCATTATTTCCTAGAATTTGAGCTGTAGATGCTGTAGGCATAGGAGCAACAAGTAAA--G 4710 Query 129254 AGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGATG 129313 | || || | ||| || | ||| | | || || |||| ||||||| || Sbjct 4709 AATTCCGTACACCATGTTTGGAAATTTTCTCCTTCAAAGCATTCCAATCCCACAAGTCTG 4650 Query 129314 TGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGT 129373 | ||||| | ||||| |||||||||||||| || || | ||||| | Sbjct 4649 TTGGTGTAACGTCCCACATGTCGTATTGCAATACCCCGTTGCTTACAGGACTCCCTTCAT 4590 Query 129374 AGGAATCGTGCACGCCGTAAGCTTT-TGCCAATTCGCAACTCGCTTCCAATGCGCCAAAA 129432 | || || | | ||| ||| ||| || |||||||| || || || ||||| ||| | Sbjct 4589 ATGATTCAT-AAGGCCCTAACATTTCCGCTAATTCGCAGCTAGCCTCTAATGCCCCATAG 4531 Query 129433 TAAATTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTACGGCATA 129492 || |||||||| |||| | | || || | | || || || ||||| || || | Sbjct 4530 TAGATTGTTTCAAATATTTGGATATTTAATAAATATGCTTGCTCACTTTCATATGGGTAA 4471 Query 129493 CGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTT 129552 |||| || | || || || || || |||| || | || |||||||||||| | Sbjct 4470 CGCATCAGTATTAGTGCATCAGCGAAGCCCTGAACCCCAATTCCTATGGGTCGATGTCTC 4411 Query 129553 CTATTGGATTTTTGTGC--CGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTA 129610 |||| ||||| | || || || | ||||| || ||||| ||||| ||||| || | Sbjct 4410 ATATTTGATTTCTTAGCTTCGGGAAGA--GGATAATAATTGATATCTATGATTTTATTCA 4353 Query 129611 AATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACAT 129670 |||| || || |||| || || | ||| | | ||| ||| | | || | Sbjct 4352 AATTTTTTGTAACTGTTTTTGTAACTTCTTTAAGCTTTTGAAAGT--CAAAAATCTTATT 4295 Query 129671 CGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTT 129730 | | ||||| || | | ||| || |||| || || || || | ||| | Sbjct 4294 AGCAG-AAACAAACATGTTTAGAGCAATAGACGCCAGGTTACAAACAGCTATCTCG--TC 4238 Query 129731 TGTCACTG--TACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATG 129788 | ||| || || |||||||| | ||||||||| || ||||||||| || | || Sbjct 4237 CGGTGCTGAATATTCTACAATTTCTGTGCACAAATTGCTGCATTTAATGGTTCCAACATT 4178 Query 129789 CTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 ||||| |||||||| ||||||||| ||| || || | ||| || || || || ||||| Sbjct 4177 TTTTTGGTTACTTTTTCTGTTGCAAGAATCCTTATATAACATATAAGGTGTTCCAGTTTC 4118 Query 129849 GACTTGCGTTTCGACAATGGTCCTGAACA-AGTCTC-GAGCCTTGATCTGTCTTACAAAT 129906 ||||| | ||| | || | | | || ||| | |||| || || | ||| | Sbjct 4117 AACTTGTGCTTCAATGATAG--CAAACCACAGTGACTGAGCTTTAATTTTTCTATTAGCA 4060 Query 129907 TTGCCACATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCG 129966 ||| ||| || ||| |||||| | ||||||||| || | || Sbjct 4059 CGGCCTTCTTTTTCATATTTTTCATACAACTTCTCAAATTCTTCTCCCCAAAGTTCATCA 4000 Query 129967 AGCAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTC 130026 ||| || ||| | | |||||||| | ||| |||||| | ||| || |||||| Sbjct 3999 AGCCCGGGGCATTTATGGGGACACATTAGTGACCAGTCTCCATCAGATTCTACGCGTTTC 3940 Query 130027 ATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCA 130086 ||||| | ||| || | ||| || ||||| || || || ||||| | || || Sbjct 3939 ATAAAAAGATCAGGAATCCAGAGAGCGTAAAATAAGTCACGCGCCCTGTGTTCATCTTTT 3880 Query 130087 CCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAA 130146 || | || ||||| || | || ||| |||| || | ||||| || || | |||| Sbjct 3879 CCTGTATTTTTTTTCAAGTCTAAAAACTCGAAAATATCTGAATGCCAAGGCTCCAAATAA 3820 Query 130147 ATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGTTG 130203 || || | ||||| || ||| ||| |||||||| || | || | |||| || Sbjct 3819 ATAGCGAACGCGCCGGGCCTTTTTCCGCCACCTTGGTCTACATAACGTGCTACATTATTA 3760 Query 130204 TAGACTCGCAACAT 130217 | |||| |||||| Sbjct 3759 AAAACTCTCAACAT 3746 >seq6671 Length=4556 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| ||||| ||||| |||| | || || ||| | | Sbjct 3980 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAACCATCA 4039 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || |||||||||||||| ||||||||||| || ||| Sbjct 4040 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAA 4099 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || ||||| || || || ||| ||||| | ||||| ||||| Sbjct 4100 CAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACTACAAT 4159 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || |||||||| | || || || ||||| | ||||| || Sbjct 4160 ATCCAGAAGGAATCCACTCTTCACTTGGTGTTGCGTCTACGCGGTGG 4206 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| ||||| ||||| | || ||||| || |||| | ||||| || | Sbjct 3521 AAAATGCAAATCTTTGTGAAAACACTCACTGGTAAGACAATCACCTTGGAAGTCGAGCCA 3580 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | ||| ||||| |||||||| || ||||||||||| || Sbjct 3581 TCTGACACTATTGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGAC 3640 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| ||| | || || || ||||| || || || ||| ||||| | ||||| ||| Sbjct 3641 CAACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACTAC 3700 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||||||| | || || || ||||| | ||||| || Sbjct 3701 AATATCCAGAAGGAATCCACTCTTCACTTGGTGTTGCGTCTACGCGGTGG 3750 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| ||||| ||||| |||| | || || || | | Sbjct 4208 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAGCCATCA 4267 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || |||||||||||||| |||||||| || || || Sbjct 4268 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 4327 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| ||||| ||||| || ||| || ||| | ||||| ||||| Sbjct 4328 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGTACCTTGTCCGACTACAAT 4387 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| || || | || || || ||||| | ||||| || Sbjct 4388 ATCCAGAAAGAGTCTACTCTTCACTTGGTCTTGCGTCTACGCGGTGG 4434 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| ||||| ||||| |||| | || || || | | Sbjct 3752 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAGCCATCA 3811 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || |||||||||||||| |||||||| || || || Sbjct 3812 GACACCATTGAGAACGTGAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 3871 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| ||||| ||||| || ||| || ||| | ||||| ||||| Sbjct 3872 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGTACCTTGTCCGACTACAAT 3931 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| || || | || || || ||||| | ||||| || Sbjct 3932 ATCCAGAAAGAGTCTACTCTTCACTTGGTCTTGCGTCTACGCGGTGG 3978 >seq153791 Length=3075 Score = 93.3 bits (102), Expect = 4e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 22250 AAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTC 22309 |||| | |||||||| || || || | |||| | || || | ||| | |||| Sbjct 2800 AAACCGGCACTCTTGCGGTTGAGCCCTCTGATAGTATCGAAAATGTAAAAGCCTAGATTC 2741 Query 22310 AAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAG 22369 | | || |||| ||||| || |||||||| ||| | ||||||| |||||||| || | Sbjct 2740 AGCAAAAAGAGGAAATTCCTCCAGATCAACAGCGTTTGGTATTTGCTGGCAAACAATTGG 2681 Query 22370 AGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTT 22429 | ||| ||||| ||||||| || || || ||||||||||| || | ||||| || | Sbjct 2680 AAGATGGTCGCACATTCTCCGACTATAATATCCAAAAAGAATCTACTTTGCATTTGGTGT 2621 Query 22430 TGCG 22433 |||| Sbjct 2620 TGCG 2617 >seq76123 Length=2128 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 22309 CAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTA 22368 ||||| || || ||||||||||| ||||| |||||| | || ||||| || || || || Sbjct 1124 CAAGATAAAGAAGGTATTCCACCAGATCAGCAACGTTTAATTTTTGCTGGTAAGCAATTG 1065 Query 22369 GAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTT 22428 || ||| ||||| | ||||| || ||||| |||||||| || || | ||| | || Sbjct 1064 GAAGATGGACGCACATTATCCGACTATAACATCCAAAAAGAGTCGACACTTCATCTGGTG 1005 Query 22429 TTGCGATTGCGCGGAGGTTTT 22449 | || ||||| || ||| || Sbjct 1004 CTCCGCTTGCGTGGTGGTATT 984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418846093890565