Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq6671 212 1e-49 seq83617 107 4e-18 seq169730 105 1e-17 seq76123 102 1e-16 >seq6671 Length=4556 Score = 212 bits (234), Expect = 1e-49 Identities = 183/227 (81%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || ||||| |||||||| || ||||| || || ||||| || || ||||| Sbjct 4206 CCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAC 4147 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | |||||||| || ||||| || ||||| || | | |||||||| |||||| Sbjct 4146 AATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGA 4087 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||||||||| |||||||| ||| |||||||||| || ||| || Sbjct 4086 ATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGTTCGACC 4027 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||||||| || || | ||||||||||| |||||||| Sbjct 4026 TCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3980 Score = 203 bits (224), Expect = 6e-47 Identities = 181/227 (80%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || ||||| |||||||| || || |||||||| ||||| || || ||||| Sbjct 3978 CCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGAC 3919 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||||||| |||||||| || || || || | | || ||||| || ||| Sbjct 3918 AAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3859 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||||||||| ||||| ||| ||| |||||||||| || || || Sbjct 3858 ATACCTTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCAATGGTGTCTGATGGCTCGACC 3799 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||||||| || || | ||||||||||| |||||||| Sbjct 3798 TCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3752 Score = 203 bits (224), Expect = 6e-47 Identities = 181/227 (80%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || ||||| |||||||| || || |||||||| ||||| || || ||||| Sbjct 4434 CCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGAC 4375 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||||||| |||||||| || || || || | | || ||||| || ||| Sbjct 4374 AAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 4315 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||||||||| |||||||| ||| |||||||||| || || || Sbjct 4314 ATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGCTCGACC 4255 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||||||| || || | ||||||||||| |||||||| Sbjct 4254 TCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 4208 Score = 161 bits (178), Expect = 2e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || ||||| |||||||| || ||||| || || ||||| || || ||||| Sbjct 3750 CCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAC 3691 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | |||||||| || ||||| || ||||| || | | |||||||| |||||| Sbjct 3690 AATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGA 3631 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||| || || || || || || || ||||| | || || ||| Sbjct 3630 ATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGCTCGACT 3571 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTA 68468 ||||||||||| || || || ||||| || || || || || |||||| || || Sbjct 3570 TCCAAGGTGATTGTCTTACCAGTGAGTGTTTTCACAAAGATTTGCATTTTGATA 3517 Score = 111 bits (122), Expect = 3e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 68343 TGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCT 68402 ||||| || ||||| |||||||||||||| || || ||||| ||| |||||| || || Sbjct 4554 TGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTGGCCTTCACGTTCTCGATAGTATCG 4495 Query 68403 GCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || || ||||||||||||||||| || || | ||||||||||| |||||||| Sbjct 4494 GATGGCTCGACCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 4436 >seq83617 Length=6259 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| | |||||| |||||||| || |||| ||| | | ||||| ||||||| Sbjct 1249 CCGCCGCGCAAGCGCAACACCAAGTGCAGTGTGGTCTCGGCTGGTATGTTGTAATCGGCC 1308 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | |||| ||||| || || || | || ||||| | || Sbjct 1309 AAGGTGCGGCCATCTTCCATCTGCCGGCCGGCAAAAATCAGACGCTGCTGGTCCGTCGGT 1368 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||| |||||||||||| | |||||| ||||| | || || || Sbjct 1369 ATATACTCCTTGCACATAATCTTTGCCTTAATAACCTCGACCGTGTCCGATGGCTCCACG 1428 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||| | ||||| |||||||||||||||||||| Sbjct 1429 TCCAGTATGATGGTGCGCTCGGTGAGTGTCTTGACGAATATCTGCAT 1475 >seq169730 Length=1905 Score = 105 bits (116), Expect = 1e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| || || || || || ||||| | | ||||| || || ||||| || || Sbjct 1902 CCATCTTCCAATTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATTCCCTCT 1843 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| |||||||| || ||||| ||||| || || | | || || || | ||| Sbjct 1842 TTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACCTCAAGAGTG 1783 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| ||||| |||||||| ||||| |||||||| Sbjct 1782 ATGGTTTTGCCCGTAAGGGTCTTTACGAAGATCTGCAT 1745 >seq76123 Length=2128 Score = 102 bits (112), Expect = 1e-16 Identities = 143/203 (70%), Gaps = 10/203 (5%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || | ||| | |||| || || || |||||||||||||||||||| ||||| Sbjct 988 CCACCACGCAAGCGGAGCACCAGATGAAGTGTCGACTCTTTTTGGATGTTATAGTCGGAT 1047 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | |||||||| || ||||| || || || || | | ||| || || |||||| Sbjct 1048 AATGTGCGTCCATCTTCCAATTGCTTACCAGCAAAAATTAAACGTTGCTGATCTGGTGGA 1107 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || ||||| | || ||||||||| || | ||| ||| Sbjct 1108 ATACCTTCTTTATCTTG----------NTAACATGCTCGATGGTATCGAAAGGTTCCACT 1157 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 |||||||| ||||| || | ||| Sbjct 1158 TCCAAGGTAATGGTCTTGCGCGT 1180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 919636292207720