Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq6671 102 6e-17 seq5352 84.2 2e-11 >seq6671 Length=4556 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 |||||||||||| ||| | |||||| | || || || || || ||| ||||| || | Sbjct 3520 CAAAATGCAAATCTTTGTGAAAACACTCACTGGTAAGACAATCACCTTGGAAGTCGAGCC 3579 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | || || | | || |||| ||||| || ||||| ||| | || | | Sbjct 3580 ATCTGACACTATTGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGA 3639 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||||||| | | ||||| |||||||| ||| | |||||| || || |||| || Sbjct 3640 CCAACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACTA 3699 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||| ||||||||||| |||||||| |||| || ||| |||| || || Sbjct 3700 CAATATCCAGAAGGAATCCACTCTTCACTTGGTGTTGCGTCTACGCGGTGG 3750 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || || || ||||||||||| ||| |||| ||| | || Sbjct 3980 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAACCATCA 4039 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || ||| || || || ||| | || | ||||| Sbjct 4040 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAA 4099 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | | ||||| |||||||| ||| | |||||| || || |||| |||||| Sbjct 4100 CAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACTACAAT 4159 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| |||||||| |||| || ||| |||| || || Sbjct 4160 ATCCAGAAGGAATCCACTCTTCACTTGGTGTTGCGTCTACGCGGTGG 4206 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || || || ||||||||||| ||| |||| || | || Sbjct 4208 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAGCCATCA 4267 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || ||| || || || ||| | ||| | |||| Sbjct 4268 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 4327 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | | |||||||||||||| || | |||||| || || |||| |||||| Sbjct 4328 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGTACCTTGTCCGACTACAAT 4387 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| || ||||||||||| |||| || ||| |||| || || Sbjct 4388 ATCCAGAAAGAGTCTACTCTTCACTTGGTCTTGCGTCTACGCGGTGG 4434 >seq5352 Length=5729 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 20076 GGGTTTGCACGGGTTCCATGTCCACGAATACGGCGACATGAGCAACGGCTGCACGTCGGC 20135 ||| || || || |||||||| ||||||| ||||| | | |||||||||||| ||||| Sbjct 3296 GGGCTTACATGGCTTCCATGTGCACGAATTTGGCGATAATACCAACGGCTGCACATCGGC 3237 Query 20136 CGGCGAGCATTTTAATCCCACCGACGAAGACCATGGCGCTCCCGATGCCGAAATTAGGCA 20195 ||| ||||| |||||| | | |||| |||||||| || | | ||| | | | || Sbjct 3236 CGGTCCACATTTCAATCCCGAGGGCAAAGAACATGGCGCACCGAACGACGAGAATCGTCA 3177 Query 20196 TGTCGGTGATTTAGGCAACAT 20216 | || |||||||| || || Sbjct 3176 CTTGGGCGATTTAGGTAATAT 3156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357372330664954