Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq6671 138 9e-28 seq5352 93.3 4e-14 >seq6671 Length=4556 Score = 138 bits (152), Expect = 9e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || ||||| | ||| || || || | || ||||| || || || ||||| ||| Sbjct 4209 ATGCCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCG 4150 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| |||||| | ||| || |||||| |||| | |||||||||||| || Sbjct 4149 GACAATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGT 4090 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || | | |||| |||||| | | |||| Sbjct 4089 GGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGTTCG 4030 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | ||||||||||||| ||| || || || ||||||||| Sbjct 4029 ACCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCATG 3979 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || ||||| | ||| || || || | ||||| ||||| || || ||||| ||| Sbjct 3981 ATGCCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCG 3922 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| |||||| | || || ||||| |||| | |||||| ||||| ||| Sbjct 3921 GACAAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 3862 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || | | |||| |||||| | | ||| Sbjct 3861 GGAATACCTTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCAATGGTGTCTGATGGCTCG 3802 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | ||||||||||||| ||| || || || ||||||||| Sbjct 3801 ACCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCATG 3751 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || ||||| | ||| || || || | ||||| ||||| || || ||||| ||| Sbjct 4437 ATGCCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCG 4378 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| |||||| | || || ||||| |||| | |||||| ||||| ||| Sbjct 4377 GACAAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 4318 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || | | |||| |||||| | | ||| Sbjct 4317 GGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGCTCG 4258 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | ||||||||||||| ||| || || || ||||||||| Sbjct 4257 ACCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCATG 4207 Score = 122 bits (134), Expect = 7e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || ||||| | ||| || || || | || ||||| || || || ||||| ||| Sbjct 3753 ATGCCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCG 3694 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| |||||| | ||| || |||||| |||| | |||||||||||| || Sbjct 3693 GACAATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGT 3634 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||||||||| || ||| | |||| | | ||||| ||||| | | || Sbjct 3633 GGAATACCTTCTTTGTCTTGGAT-TTTAGCTTTAACATTTTCAATAGTGTCAGATGGCTC 3575 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| |||| ||| | || || || || || ||||| ||||| || ||||| Sbjct 3574 GACTTCCAAGGTGATTGTCTTACCAGTGAGTGTTTTCACAAAGATTTGCAT 3524 >seq5352 Length=5729 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/152 (75%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 43834 GCTTCAATGTTACCTAAATCGCCGACGTGACGCTCTATCGAA-TTGGGTGCGCCATGATT 43892 |||||||| |||||||||||||| | |||||| | | ||| || ||||||||||| | Sbjct 3150 GCTTCAATATTACCTAAATCGCCCAAGTGACGAT-TCTCGTCGTTCGGTGCGCCATGTTC 3208 Query 43893 GCGACCAAAAGGATTGAAATGTTCGCCGGCGGACGTACATCCGTTACTGGTGTCGCCGAA 43952 || |||||||||||| ||||| || || || ||||| | | ||||| || Sbjct 3209 TTTGCCCTCGGGATTGAAATGTGGACCGGCCGATGTGCAGCCGTTGGTATTATCGCCAAA 3268 Query 43953 TTCGTGCACGTGAAATCCATG-AAGACCTTTG 43983 ||||||||| || || ||||| ||| |||||| Sbjct 3269 TTCGTGCACATGGAAGCCATGTAAGCCCTTTG 3300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419251639988412