Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6671 122 2e-22 seq153791 96.9 8e-15 >seq6671 Length=4556 Score = 122 bits (134), Expect = 2e-22 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | | || | |||| ||| ||| || |||||||| |||| Sbjct 4210 CATG-CCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGT 4152 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| | ||||| || ||||| ||||| || || |||||||||| ||||||||| Sbjct 4151 CGGACAATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTG 4092 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| || ||||| || || || || || || || || || || || | || | || Sbjct 4091 GTGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGTT 4032 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || | ||||| || || ||||||| |||||||||||| |||||||| Sbjct 4031 CGACCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3980 Score = 104 bits (114), Expect = 5e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||| ||||||| | || || || ||||| || || || || || ||| Sbjct 3942 TCTTTCTGGATATTGTAGTCGGACAAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAG 3883 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| || ||||| || ||||| || || || || || || |||||| Sbjct 3882 ATCAAACGCTGCTGG---TCTGGAGGAATACCTTCCTTGTCTTGAATCTTGGCCTTCACG 3826 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | || || || | ||||| || || ||||||| ||||||| Sbjct 3825 TTCTCAATGGTGTCTGATGGCTCGACCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTG 3766 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 3765 ACGAAGATCTGCAT 3752 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||| ||||||| | || || || ||||| || || || || || ||| Sbjct 4398 TCTTTCTGGATATTGTAGTCGGACAAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAG 4339 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| || ||||| || ||||| || || || || || || || || Sbjct 4338 ATCAAACGCTGCTGG---TCTGGAGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACA 4282 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | || || || | ||||| || || ||||||| ||||||| Sbjct 4281 TTCTCAATGGTGTCTGATGGCTCGACCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTG 4222 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 4221 ACGAAGATCTGCAT 4208 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| || || |||||||| || |||||||| || |||| |||| | || Sbjct 4545 GGAATACCTTCCTTGTCTTGGATTTTGGCCTTCACGTTCTCGATAGTATCGGATGGCTCG 4486 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| || || ||||||| |||||||||||| |||||||| Sbjct 4485 ACCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 4436 >seq153791 Length=3075 Score = 96.9 bits (106), Expect = 8e-15 Identities = 100/130 (77%), Gaps = 6/130 (5%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||||||||||||||||| || ||||| || ||||| |||||||| || || || Sbjct 2640 TTCTTTTTGGATATTATAGTCGGAGAATGTGCGACCATCTTCCAATTGTTTGCCAGCAAA 2699 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 | || ||||||||| |||| || ||| | ||||| | ||| || | ||||| || Sbjct 2700 TACCAAACGCTGTTG---ATCTGGAGGAATTTCCTCTTTTTGCTGAATCTAGGCTTTTAC 2756 Query 288399 GTTTTCTATA 288408 ||||| ||| Sbjct 2757 ATTTTCGATA 2766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177048675772878