Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq172366 224 1e-53 seq6671 109 5e-19 >seq172366 Length=6938 Score = 224 bits (248), Expect = 1e-53 Identities = 1127/1782 (63%), Gaps = 48/1782 (3%) Strand=Plus/Minus Query 153671 tttGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCC 153730 ||| || || |||||| || |||| ||||| || || || |||||||||||||| || Sbjct 5185 TTTATCAACAGTAAATTGTATAGCATTAGCGGCTGGCTTGGTACGCAAATAATACATTCC 5126 Query 153731 GGTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGG 153790 ||||| | |||| ||||||| | | || | ||| | | | |||| Sbjct 5125 AGTTTTAAGACCAGCCTTCCAAGCATAGAAATGAATTGAAGTGAGCTTTCCATAGTTGGG 5066 Query 153791 CTGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGC 153850 | || | | |||||||||||| || ||||| |||||||| || | ||| || || Sbjct 5065 TTCTGCAACGTGAATGTTAAACGACTGACTTTGATCAATGAAAGCTCCTCTATCAGCAGC 5006 Query 153851 CATGTCAATCAA-GTTTTTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGT 153909 ||| | ||| | ||| |||| |||||||| || || ||||| | | || |||| Sbjct 5005 CATTTTAATTGTTGATTTAACTGAA-ATTTCCCAAACTGTCTTGTATAAGTCTCGAATGG 4947 Query 153910 CGTCGGGTATGCGATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGCA 153969 | || || || || || || | | || | | |||||| ||| || Sbjct 4946 GTTTAGGAATAGTTTCTATGTTTTGTATAGAACCACGACTTGATATAATTTGATTCTTCA 4887 Query 153970 TGTGGTCGTCGTACAAATTTAGT-CGACATAAATCTTCAACCAAGTGCTGGTTAATTACT 154028 | | ||| || | || | ||| || | | |||| | | ||| || |||| ||| Sbjct 4886 TATTGTCATCCCATAATTCGAGTTCGGTA-AGATCTCTGAGAAGGTGATGATTAACAACT 4828 Query 154029 TGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGAT 154088 ||||| || || | || || || | || | ||| ||| |||| || || ||| Sbjct 4827 TGAAATTCACCAGATAAAACACGCCTTGTGTATATATTAGAGGTATACGGTTCAAAGGAT 4768 Query 154089 TCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAG 154148 || || || |||| ||||||||||||| |||||| |||||| || || | ||||| Sbjct 4767 TCATTATTTCCTAGAATTTGAGCTGTAGATGCTGTAGGCATAGGAGCAACAAGTAAAGAA 4708 Query 154149 TTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTA 154208 || || | ||| ||||| | ||| | || ||| | ||||| |||||||| || Sbjct 4707 TTCCGTACACCATGTTTGGAAATTTTCTCCTTCAAAGCATTCCAATCCCACAAGTCTGTT 4648 Query 154209 GGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACT---GTCACTA 154265 ||| |||| |||||||||||||||||| || || || | ||||| ||| || Sbjct 4647 GGTGTAACGTCCCACATGTCGTATTGCAATACCCCGTTGCTTACAGGACTCCCTTCA-TA 4589 Query 154266 TAACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAG 154325 | | | || ||||| || || || || ||||| || || ||||| ||| ||||| Sbjct 4588 TGATT--CATAAGGCCCTAACATTTCCGCTAATTCGCAGCTAGCCTCTAATGCCCCATAG 4531 Query 154326 TATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAAT 154385 || | ||||| ||||| | ||||| | | |||| |||||||| || || | Sbjct 4530 TAGATTGTTTCAAATATTTGGATATTTAATAAATATGCTTGCTCACTTTCATATGGGTAA 4471 Query 154386 CCCAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTT 154445 | || | | ||||| |||| || |||| || | ||| | ||||| ||| | Sbjct 4470 CGCATCAGTATTAGTGCATCAGCGAAGCCCTGAACCCCAATTCCTATGGGTCGATGTCTC 4411 Query 154446 AAATTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCGATAATTTTATTTANN 154505 | ||| |||| || || | |||||||||||||||||||| || |||||||| | Sbjct 4410 ATATTTGATTTCTTAGCTTCGGGAAGAGGATAATAATTGATATCTATGATTTTATTCA-- 4353 Query 154506 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGC--GACAAAATCAAACACTCCGCTTT 154563 | || ||| ||||| | || | | Sbjct 4352 AATTTTTTGTAACTGTTTTTGTAACTTCTTTAAGCTTTTGAAAGTCAAA-AATC--TTAT 4296 Query 154564 TAATA-AAACGA-----TTTACACACACAGACGCCAAGTTGCAAACGGCAATTTCTTCAG 154617 || | |||| | |||| | | |||||||| ||| ||||| || || || || | Sbjct 4295 TAGCAGAAACAAACATGTTTAGAGCAATAGACGCCAGGTTACAAACAGCTATCTCGTCCG 4236 Query 154618 AACTACTG--TATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTT 154675 | ||| |||| |||||||||| ||||||||| |||||| |||||| || | || Sbjct 4235 --GTGCTGAATATTCTACAATTTCTGTGCACAAATTGCTGCATTTAATGGTTCCAACATT 4178 Query 154676 TTTCTGATTCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTC 154735 ||| || || ||| ||||||| | || || || || || || || || || ||||| Sbjct 4177 TTTTTGGTTACTTTTTCTGTTGCAAGAATCCTTATATAACATATAAGGTGTTCCAGTTTC 4118 Query 154736 CACTTGGGTTTCAATAATTGTGCGAAACA----GACTTCGCGCCTCAACTTGACAAGTAA 154791 ||||| | |||||| || || || || |||| | || | || || | | || Sbjct 4117 AACTTGTGCTTCAATGAT--AGCAAACCACAGTGACT--GAGCTTTAATTTTTCTATTAG 4062 Query 154792 ATCGATTTTCGCTCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCG 154851 || ||| | ||||||| ||| |||| || ||||| ||| | | | || | Sbjct 4061 CACGGCCTTCTTTTTCATATTTTTCATACAACTTCTCAAATTCTTCTCCCCA-AAGTTCA 4003 Query 154852 ACAA-ACCGGGACAGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGT 154910 ||| ||||| || | ||||||||| | |||||| | | | || ||||||| Sbjct 4002 TCAAGCCCGGGGCATTTATGGGGACACATTAGTGACCAGTCTCCATCAGATTCTACGCGT 3943 Query 154911 TTCATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCA 154970 |||||||| | ||| || | ||| | |||||| || || ||||||||| | | || || Sbjct 3942 TTCATAAAAAGATCAGGAATCCAGAGAGCGTAAAATAAGTCACGCGCCCTGTGTTCATCT 3883 Query 154971 GCGCCCATGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAA 155030 || | ||| || || | ||||| || | || || | ||||| ||||| ||| Sbjct 3882 TTTCCTGTATTTTTTTTCAAGTCTAAAAACTCGAAAATATCTGAATGCCAAGGCTCCAAA 3823 Query 155031 TATACGGCCATCGCGCCTTTGCGTTTT---CCTCCTTGATCCACGTGACGCACACAATTA 155087 || | || | |||||| | |||| || ||||| || || | ||| | |||| Sbjct 3822 TAAATAGCGAACGCGCCGGGCCTTTTTCCGCCACCTTGGTCTACATAACGTGCTACATTA 3763 Query 155088 TTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGTATCGCG 155147 || | || | ||||| || | | || | | || || || || || | ||| | Sbjct 3762 TTAAAAACTCTCAACATAGGCACTAAACCATTTGATGTTCCATTAGTACCGCATATAGAT 3703 Query 155148 CTGCCGCGAGCACGCGCTTTATGAACATTAACGCCCAAACCTCCGCCGTATTTAGATATT 155207 | || ||| || ||||||||| | || | ||||| | |||| || || Sbjct 3702 GTTCCTTTAGCTCGAATACAATGAACATTGATTCCAATTCCTCCAGCTGATTTCGAAATC 3643 Query 155208 TGCGCACAGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAAC 155267 ||||| | | | || || | | ||||||| ||| ||| || || || | | Sbjct 3642 ATTGCACATTGTTCTACAGATTTGAAAATTCCTTCAATGGAATCTGCTACCATTGTAAGC 3583 Query 155268 AAGAAACACGAAGATAATTGAGG--TTGAGG--GCAGCCGGCCGCAAATAATGTAGGACT 155323 || ||||| || || | ||| || || | ||| || |||||||| || ||| Sbjct 3582 AAAAAACAAGATGACAGTTGTGGCCTTCTTGTTGCA----GCAGCAAATAAAGTTGGAGA 3527 Query 155324 AGCGTGTGTAAACATTTTGTTGGCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTC 155383 ||| || ||||| ||| | | || ||||| ||||| ||||| || || ||||| Sbjct 3526 AGCATGGGTAAAGTATTTTTCAGAAAGCAAATTGTATGTTTCAATGGCAGCATCGATGTC 3467 Query 155384 ACGACCGTGTATACCGATCGCCACGCGCATCAGCATGTGTTG 155425 ||||||||| || | | || | ||||| ||| || || Sbjct 3466 TTCACCGTGTATTCCAACTGATACTCTCATCAACATATGCTG 3425 >seq6671 Length=4556 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || ||||| || || ||||| || | | ||| ||| | ||||| | |||| Sbjct 4410 TGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAAGGTACGCCCATCTTCCAACTGC 4351 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||| ||| | || | ||||||||||| |||||||| ||||| || ||||| || || Sbjct 4350 TTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTG 4291 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| ||| | || || | || || || | || | ||| ||||||||| Sbjct 4290 GCCTTGACATTCTCAATGGTGTCTGATGGCTCGACCTCCAAGGTGATGGTTTTGCCGGTC 4231 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 ||||| || ||||| || ||||| Sbjct 4230 AAAGTCTTGACGAAGATCTGCAT 4208 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || ||||| || || ||||| || | | ||| ||| | ||||| | |||| Sbjct 3954 TGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAAGGTACGCCCATCTTCCAACTGC 3895 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||| ||| | || | ||||||||||| |||||||| ||||| || ||||| || || Sbjct 3894 TTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTG 3835 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || ||| | || || | || || || | || | ||| ||||||||| Sbjct 3834 GCCTTCACGTTCTCAATGGTGTCTGATGGCTCGACCTCCAAGGTGATGGTTTTGCCGGTC 3775 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 ||||| || ||||| || ||||| Sbjct 3774 AAAGTCTTGACGAAGATCTGCAT 3752 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| || || || ||||| || | | ||||| | ||||| | ||| Sbjct 3726 TGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGACAATGTGCGACCATCTTCCAATTGC 3667 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||| || | || | ||||| ||||| || ||||| |||||||| ||||| ||||| Sbjct 3666 TTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGGATTTTA 3607 Query 64361 TGCTTTACAACCTCCACT-GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 |||||| | | || | || ||| | || ||||| | || | ||||| || || Sbjct 3606 -GCTTTAACATTTTCAATAGTGTCAGATGGCTCGACTTCCAAGGTGATTGTCTTACCAGT 3548 Query 64420 CAAAGTTTTTACGAAAATTTGCATTTTAATA 64450 | ||||| || || ||||||||||| ||| Sbjct 3547 GAGTGTTTTCACAAAGATTTGCATTTTGATA 3517 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| || || || ||||| || | | ||||| | ||||| | ||| Sbjct 4182 TGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGACAATGTGCGACCATCTTCCAATTGC 4123 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||| || | || | ||||| ||||| || ||||| ||||| || ||||| || || Sbjct 4122 TTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGAATCTTG 4063 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| ||| | || || | || || || | || | ||| ||||||||| Sbjct 4062 GCCTTGACATTCTCAATGGTGTCTGATGGTTCGACCTCCAAGGTGATGGTTTTGCCGGTC 4003 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 ||||| || ||||| || ||||| Sbjct 4002 AAAGTCTTGACGAAGATCTGCAT 3980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498568059210440