Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_010495.1 Length=45051 Score E Sequences producing significant alignments: (Bits) Value seq18725 127 6e-25 seq90214 118 3e-22 >seq18725 Length=24047 Score = 127 bits (140), Expect = 6e-25 Identities = 194/273 (71%), Gaps = 4/273 (1%) Strand=Plus/Minus Query 32902 TCAGTCCACTTACGAGTGCGAAGTTGTCCTTCTATATAAACCTGCGACCCTTTACGAAGA 32961 || ||||| || | || | | ||| ||||| |||||||| |||| ||||| |||| Sbjct 10462 TCCGTCCATTTTCTTGTTTGTAATTGACCTTCAATATAAACAAGCGAACCTTTTTTAAGA 10403 Query 32962 TACTCTCCTGCAACTTCCGCAATTTTTCCGAAGATAACAACTCGATGCCATTCAGTATGT 33021 || | ||||||| ||| |||| |||||| || ||||||| ||| |||||||| ||| | Sbjct 10402 TATTGACCTGCAATTTCAGCAAGTTTTCCAAAAATAACAATTCGGTGCCATTCTGTACGA 10343 Query 33022 TCTTTCTTTTCTCCTGTTTGCTTGTCTTTCCACTGCTCAGATGTTGCAACAGAAAGGTTC 33081 |||| | |||||||| || |||||||| || |||||||||| | | |||| Sbjct 10342 TCTTGTGGCTGACCTGTTTGTTTATCTTTCCAAGTTTCCGATGTTGCAATCGTTAAGTTC 10283 Query 33082 GCAATTGCAGAGCCTGATGCTGAATATTTAACTTCAGGGTCATTTCCGAGAGTGCCGACA 33141 | || |||| || || ||||||||| ||||| || | || | | |||| || Sbjct 10282 GTAACTGCACCACCATTTGGCATATATTTAACATCAGGATCTTGCCCTAAA-TGCCC-CA 10225 Query 33142 ATGA--TTACTTTATTTACGCCGCGTGCCATTT 33172 || | |||||||||||| || | ||||||| Sbjct 10224 ATAAAATTACTTTATTTATTCCTCTAGCCATTT 10192 >seq90214 Length=2210 Score = 118 bits (130), Expect = 3e-22 Identities = 183/256 (71%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 32902 TCAGTCCACTTACGAGTGCGAAGTTGTCCTTCTATATAAACCTGCGACCCTTTACGAAGA 32961 ||||||||||| | ||| ||| || ||| || |||||||| | || ||||| ||| Sbjct 755 TCAGTCCACTTTCTAGTCTGAATTTTTCCCTCGATATAAACAAGTGATCCTTTTTTGAGA 814 Query 32962 TACTCTCCTGCAACTTCCGCAATTTTTCCGAAGATAACAACTCGATGCCATTCAGTATGT 33021 || | ||||||| |||||||| || || || ||||| || |||||||||||||| Sbjct 815 TATTGACCTGCAATTTCCGCAAGCTTGCCAAAAATAACTACACGATGCCATTCAGTTCTA 874 Query 33022 TCTTTCTTTTCTCCTGTTTGCTTGTCTTTCCACTGCTCAGATGTTGCAACAGAAAGGTTC 33081 |||| | | ||||| ||| || |||||||| ||||||||||||| || ||| Sbjct 875 TCTTGTTGCTGTCCTGATTGTTTATCTTTCCAGCTTTCAGATGTTGCAATGTTTAGATTC 934 Query 33082 GCAATTGCAGAGCC-TGATGCTGAATATTTAACTTCAGGGTCATTTCCGAGAGT-GCCGA 33139 |||| ||| || | | || ||| ||||||||||| || | ||| | ||| ||| | Sbjct 935 GCAACGGCATTTCCATTAGGC-ATATACTTAACTTCAGGATCTTGTCCTA-AGTGGCCTA 992 Query 33140 CAATGATTACTTTATT 33155 | || |||||||| Sbjct 993 ATAATATAACTTTATT 1008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143746709123906