Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq172366 116 4e-21 seq6671 96.9 3e-15 >seq172366 Length=6938 Score = 116 bits (128), Expect = 4e-21 Identities = 614/962 (64%), Gaps = 25/962 (3%) Strand=Plus/Minus Query 153027 TGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAA 153086 || || || |||||||| || || | || || || || |||| ||| || | Sbjct 4839 TGATTAACAACTTGAAATTCACCAGATAAAACACGCCTTGTGTATATATTAGAGGTATAC 4780 Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146 |||||||||||||| ||||| ||||| |||||||| || | ||| || ||||| || Sbjct 4779 GGTTCAAAGGATTCATTATTTCCTAGAATTTGAGCTGTAGATGCTGTAGGCATAGGAGCA 4720 Query 153147 ACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 || | ||||||||||| | || || ||| | |||||||| || | ||||||| Sbjct 4719 ACAAGTAAAGAATTCCGTACACCATGTTTGGAAATTTTCTCCTTCAAAGCATTCCAATCC 4660 Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGA 153266 |||| | | ||||| ||| |||||||||||| || || || || || | ||| Sbjct 4659 CACAAGTCTGTTGGTGTAACGTCCCACATGTCGTATTGCAATACCCCGTTGCTTACAGGA 4600 Query 153267 CTGCCGGCAAACG-TACTGTAGCTGCCGTCGC-GTTGGGCCAGTTCGCAGCTAGCCTCGA 153324 || || || | | | | || ||| | | || || | ||||||||||||||| | Sbjct 4599 CTCCCTTCATATGATTCATAAG--GCCCTAACATTTCCGCTAATTCGCAGCTAGCCTCTA 4542 Query 153325 GCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCT 153384 || |||||||| || ||||| ||||| |||| | | |||| || || | Sbjct 4541 ATGCCCCATAGTAGATTGTTTCAAATATTTGGATATTTAATAAATATGCTTGCTCACTTT 4482 Query 153385 CGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444 | || || |||| ||| | | || || || | ||||| | || | || |||| Sbjct 4481 CATATGGGTAACGCATCAGTATTAGTGCATCAGCGAAGCCCTGAACCCCAATTCCTATGG 4422 Query 153445 GTCGATG-CTTCTCGTTGCTGCGCCTCGCGCTCGCTATG-GGATAGTGATTGCGATCGAT 153502 ||||||| || | ||| | | | || ||| | | ||||| | |||| ||| || Sbjct 4421 GTCGATGTCTCATATTTGAT-TTCTTAGC-TTCGGGAAGAGGATAATAATTGATATCTAT 4364 Query 153503 AATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATA 153562 ||||| || | || || ||| || | | ||||| || | || ||| | Sbjct 4363 GATTTTATTCAAATTTTTTGTAACTGTTTTTGTAACTTCTTTAAGCTTTTGAAAGTCAAA 4304 Query 153563 GGTCAT-TTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGG 153621 || | || | || | | ||| || | |||||||||||||| ||||| || | Sbjct 4303 AATCTTATTAGCAGAAAC--AAACAT--GTTTAGAGCAATAGACGCCAGGTTACAAACAG 4248 Query 153622 CCGTCTCTTCGGCGTCGCTG--TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTAT 153679 | |||| || || |||| || | || || || | ||| | ||||||||||| || Sbjct 4247 CTATCTCGTC--CGGTGCTGAATATTCTACAATTTCTGTGCACAAATTGCTGCATTTAAT 4190 Query 153680 GACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 | || | ||||| || || ||||| | ||||| | || || | | ||| || || Sbjct 4189 GGTTCCAACATTTTTTTGGTTACTTTTTCTGTTGCAAGAATCCTTATATAACATATAAGG 4130 Query 153740 TCCGCCGGTCTCGACTTGCGTTTCGACGATA--AACCTATGCAGGTCCTGCGCTCGCACC 153797 | || || || ||||| | ||| | |||| || | | ||| ||| ||| | Sbjct 4129 TGTTCCAGTTTCAACTTGTGCTTCAATGATAGCAAACCA--CAGTGACTGAGCTTTAA-- 4074 Query 153798 CGCTGCCGATAG--CGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGC 153855 | | ||| ||||| || | || ||| || |||| |||||| || || | Sbjct 4073 TTTTTCTATTAGCACGGCCTTCTTTTTCATATTTTTCATACAACTTCTCAAATTCTTCTC 4014 Query 153856 CGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGG 153915 | | || | || ||||| || | ||| |||||||| || ||||| | || | Sbjct 4013 CCCAAAGTTCATCAAGCCCGGGGCATTTATGGGGACACATTAGTGACCAGTCTCCATCAG 3954 Query 153916 CGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCT 153975 | |||||| ||| || ||||| || | |||||| ||||| | | ||| |||||| Sbjct 3953 ATTCTACGCGTTTCATAAAAAGATCAGGAATCCAGAGAGCGTAAAATAAGTCACGCGCCC 3894 Query 153976 TG 153977 || Sbjct 3893 TG 3892 >seq6671 Length=4556 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | |||||| || || || | | || ||||| || || ||||||||| Sbjct 3751 GCCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGA 3692 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || | ||| || || | |||| | |||||||||||| || || Sbjct 3691 CAATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGG 3632 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||||||||| |||||| ||| | | ||| | ||||| | | ||| || Sbjct 3631 AATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGCTCGAC 3572 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || |||||||| || ||||| ||||| || ||||| Sbjct 3571 TTCCAAGGTGATTGTCTTACCAGTGAGTGTTTTCACAAAGATTTGCAT 3524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495192948324720