Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq6671 125 5e-24 seq169730 105 5e-18 seq5352 87.8 1e-12 seq153791 84.2 2e-11 >seq6671 Length=4556 Score = 125 bits (138), Expect = 5e-24 Identities = 172/237 (73%), Gaps = 5/237 (2%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | || || || ||||| || || || || || || ||||| ||| Sbjct 3752 TGCCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCG- 3694 Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || ||| || | ||||| ||||| ||||||||| | ||||||||||||||||| Sbjct 3693 -GACAATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGG 3635 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 |||||| ||||| ||||| ||||| ||| ||| |||| ||||| || || Sbjct 3634 TGGAATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGCTC 3575 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15182 || || ||||| || || ||||| || || ||||| ||||| |||||||| ||||| Sbjct 3574 GACTTCCAAGGTGATTGTCTTACCAGTGAGTGTTTTCACAAAGATTTGCAT-TTTGA 3519 Score = 118 bits (130), Expect = 8e-22 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | || || || ||||| || || || || || || ||||| ||| Sbjct 4208 TGCCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCG- 4150 Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || ||| || | ||||| ||||| ||||||||| | ||||||||||||||||| Sbjct 4149 -GACAATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGG 4091 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 |||||| ||||||||||| ||| ||| || ||| | || || || || ||| Sbjct 4090 TGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGTTC 4031 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| |||||||| || |||| ||| || || || || ||||| Sbjct 4030 GACCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3980 Score = 105 bits (116), Expect = 5e-18 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | || || || ||||| ||||| ||||| || || ||||| ||| Sbjct 4436 TGCCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCG- 4378 Query 15008 TGAGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || || | | | | ||||| || || |||||||| | ||||||||||| ||||| Sbjct 4377 -GACAAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGG 4319 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 ||||| ||||||||||| ||| ||| || ||| | || || || || || Sbjct 4318 AGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGCTC 4259 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| |||||||| || |||| ||| || || || || ||||| Sbjct 4258 GACCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 4208 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | || || || ||||| ||||| ||||| || || ||||| ||| Sbjct 3980 TGCCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCG- 3922 Query 15008 TGAGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || || | | | | ||||| || || |||||||| | ||||||||||| ||||| Sbjct 3921 -GACAAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGG 3863 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 ||||| ||||||||||| ||| ||| || || | || || || || || Sbjct 3862 AGGAATACCTTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCAATGGTGTCTGATGGCTC 3803 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| |||||||| || |||| ||| || || || || ||||| Sbjct 3802 GACCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3752 >seq169730 Length=1905 Score = 105 bits (116), Expect = 5e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| |||||||||||||| |||||||||||||||| || |||||||| || ||| Sbjct 1899 TCTTCCAATTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATTCCCTCTTTG 1840 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || ||| ||| ||| ||| |||| |||||||| || || || | || ||| Sbjct 1839 TCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACCTCAAGAGTGATG 1780 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 ||||| || || || || ||||| || || |||||||| Sbjct 1779 GTTTTGCCCGTAAGGGTCTTTACGAAGATCTGCATATT 1742 >seq5352 Length=5729 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 90624 AATATTTCCTAAATCGCCAACGTGTCGTTCAATGGCATTTGGTGCGCCGTGATCGCGTCC 90683 |||||| ||||||||||| | ||| || | | | || |||||||| || || || Sbjct 3155 AATATTACCTAAATCGCCCAAGTGACGATTCTCGTCGTTCGGTGCGCCATGTTCTTTGCC 3214 Query 90684 GGTGGGATTAAAATGTTCGCCCGCAGATGTGCAACCGTTAGTTGTGTCACCAAATTCGTG 90743 |||||| |||||| || || |||||||| ||||| || | || ||||||||||| Sbjct 3215 CTCGGGATTGAAATGTGGACCGGCCGATGTGCAGCCGTTGGTATTATCGCCAAATTCGTG 3274 Query 90744 CACATGAAAACCGTGCAAACCTTTTG 90769 |||||| || || || || || |||| Sbjct 3275 CACATGGAAGCCATGTAAGCCCTTTG 3300 >seq153791 Length=3075 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 || || ||||| | ||||| |||||||| || || || ||| |||||| || | | Sbjct 2620 AACACCAAATGCAAAGTAGATTCTTTTTGGATATTATAGTCG--GAGAATGTGCGACCAT 2677 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| |||||||||||||| ||| |||||||||||| || |||||| | || || | Sbjct 2678 CTTCCAATTGTTTGCCAGCAAATACCAAACGCTGTTGATCTGGAGGAATTTCCTCTTTTT 2737 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATC 15116 ||| | | ||||||| |||| ||| |||| Sbjct 2738 GCTGAATCTAGGCTTTTACATTTTCGATACTATC 2771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356641070378285