Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq172366 237 1e-57 seq6671 111 1e-19 seq169730 87.8 2e-12 >seq172366 Length=6938 Score = 237 bits (262), Expect = 1e-57 Identities = 939/1458 (64%), Gaps = 42/1458 (3%) Strand=Plus/Plus Query 123237 ATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC---AAACGCAAA 123293 ||| || |||||| ||||| | | || | || ||||| || ||| ||| | Sbjct 3746 ATGTTGAGAGTTTTTAATAATGTAGCACGTTATGTAGACCAAGGTGGCGGAAAAAGGCCC 3805 Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTA 123353 |||||| | || || ||| | || || ||||| ||| | | ||| |||||| | || Sbjct 3806 GGCGCGTTCGCTATTTATTTGGAGCCTTGGCATTCAGATATTTTCGAGTTTTTAGACTTG 3865 Query 123354 AAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTA 123413 ||| || | || || ||| | | || || || || || |||||| | ||| | Sbjct 3866 AAAAAAAATACAGGAAAAGATGAACACAGGGCGCGTGACTTATTTTACGCTCTCTGGATT 3925 Query 123414 CCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGAT 123473 || ||| | |||||| ||||||| || || || | ||||| || ||||||||| || Sbjct 3926 CCTGATCTTTTTATGAAACGCGTAGAATCTGATGGAGACTGGTCACTAATGTGTCCCCAT 3985 Query 123474 CGGTGTCCCGG-CTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATA 123532 || ||||| ||||| || ||| || | | ||||| ||||||| | |||| Sbjct 3986 AAATGCCCCGGGCTTGATGAAC-TTTGGGGAGAAGAATTTGAGAAGTTGTATGAAAAATA 4044 Query 123533 CGAGCGCGAAGGCA-----AACAGGTTAGTCAG-GTTCCGGCAC-GTGATTTGTTCAAAT 123585 || |||||| || || | | | | || | ||| ||| |||| | Sbjct 4045 TGAAAAAGAAGGCCGTGCTAATAGAAAAATTAAAGCTCAGTCACTGTGGTTTGCT----- 4099 Query 123586 TTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCA 123645 || || ||| ||||||| ||||| ||||| || || ||| | || || || | |||| Sbjct 4100 --ATCATTGAAGCACAAGTTGAAACTGGAACACCTTATATGTTATATAAGGATTCTTGCA 4157 Query 123646 ACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAA 123705 |||| |||| || || | || | ||||| || ||||| || ||| | ||| | |||| Sbjct 4158 ACAGAAAAAGTAACCAAAAAAATGTTGGAACCATTAAATGCAGCAATTTGTGCACAGAAA 4217 Query 123706 TTATCGAATA--CAGCGATGCCGATCAAG-TGGCCGTGTGTAATTTGGCTTCGATTTGCG 123762 || | ||||| |||| ||| | || | || || ||||| |||| || ||| Sbjct 4218 TTGTAGAATATTCAGCA---CCGGACGAGATAGCTGTTTGTAACCTGGCGTCTATTGCTC 4274 Query 123763 TGAA-----TCGTTGCGTCGAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAAC 123817 | || | ||| | | || | | |||| | || |||| ||| ||| | || Sbjct 4275 TAAACATGTTTGTTTCTGCTAATAAGAT--TTTTGACTTTCAAAAGCTTAAAGAAGTTAC 4332 Query 123818 AAAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGA 123877 |||||| || ||| |||||||| ||||| || ||| | |||| ||||||| | || Sbjct 4333 AAAAACAGTTACAAAAAATTTGAATAAAATCATAGATATCAATTATTATCCTCTTCCCGA 4392 Query 123878 AGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGA 123937 ||| || ||| ||| ||| |||| | ||| | || |||| || || || || Sbjct 4393 AGCTAAGAAATCAAATATGAGACATCGACCCATAGGAATTGGGGTTCAGGGCTTCGCTGA 4452 Query 123938 CGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCA 123997 || | || || |||| || || ||||| || ||||| | || | |||| || Sbjct 4453 TGCACTAATACTGATGCGTTACCCATATGAAAGTGAGCAAGCATATTTATTAAATATCCA 4512 Query 123998 AATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAAT-TC 124056 |||| |||||||| || || || || || ||||| ||||||||| | ||| |||| | Sbjct 4513 AATATTTGAAACAATCTACTATGGGGCATTAGAGGCTAGCTGCGAATTAGCGGAAATGTT 4572 Query 124057 ACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGC--CGAGGTATTTTGCAGTACGA 124114 | ||| | || ||| || | || || || | ||| || |||||| ||| ||||| Sbjct 4573 AGGGC-CTTATGAATCATATGAAGGGAGTCCTGTAAGCAACGGGGTATT--GCAATACGA 4629 Query 124115 CATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATC 124174 ||||||| | | |||||| ||| | |||||||| |||| | ||| || | || || Sbjct 4630 CATGTGGGACGTTACACCAACAGACTTGTGGGATTGGAATGCTTTGAAGGAGAAAATTTC 4689 Query 124175 GACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCA 124234 | || ||| | || || || | | || || ||||| || ||| | || ||||| Sbjct 4690 CAAACATGGTGTACGGAATTCTTTACTTGTTGCTCCTATGCCTACAGCATCTACAGCTCA 4749 Query 124235 AATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGT 124294 |||| ||||||| || |||||||| || |||| || ||| | ||| | || || Sbjct 4750 AATTCTAGGAAATAATGAATCCTTTGAACCGTATACCTCTAATATATACACAAGGCGTGT 4809 Query 124295 GTTAGCCGGCGATTTTCAAGTGATAAATCATCA-TTTGGTGGACGACTTGGTGGCGTTAA 124353 ||| | || || |||||||| | |||||||| || || ||| | | | Sbjct 4810 TTTATCTGGTGAATTTCAAGTTGTTAATCATCACCTTCTCAGAGATCTTACCGAACTCGA 4869 Query 124354 ATTTGTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCA 124413 | || | ||||| || ||| || ||||||| | |||| | || || Sbjct 4870 A-TTATGGGATGACAATATGAAGAATCAAATTATATCAAGTCGTGGTTCTATACAAAACA 4928 Query 124414 TCGCTTCGATTCCGGAACAC-GTCAAGCAACTGTACAAAACCGTGTGGGAAATGAAAAAT 124472 | | | ||||| ||| | || || | | ||||| || || |||||||| | | Sbjct 4929 TAGAAACTATTCCTAAACCCATTCGAG-ACTTATACAAGACAGTTTGGGAAATTTCAGTT 4987 Query 124473 AAACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTT 124532 ||| | |||| ||||||| | || |||| || | || ||||||||||| || ||| Sbjct 4988 AAATCAACAATTAAAATGGCTGCTGATAGAGGAGCTTTCATTGATCAAAGTCAGTCGTTT 5047 Query 124533 AACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGG 124592 ||| | || || ||||||| ||| | | || || || | | || ||| Sbjct 5048 AACATTCACGTTGCAGAACCCAACTATGGAAAGCTCACTTCAATTCATTTCTATGCTTGG 5107 Query 124593 AGCAGCGGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATT 124652 | || || ||||| || |||||||| || | ||||| || || || |||| || Sbjct 5108 AAGGCTGGTCTTAAAACTGGAATGTATTATTTGCGTACCAAGCCAGCCGCTAATGCTATA 5167 Query 124653 CAATTTACCGTCGACAAA 124670 |||||||| || || ||| Sbjct 5168 CAATTTACTGTTGATAAA 5185 >seq6671 Length=4556 Score = 111 bits (122), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | |||||| | || || || |||||||| |||||||| || ||| Sbjct 4209 ATGCCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCG 4150 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | || ||| |||||||| || || ||| | ||||| || || ||||| | Sbjct 4149 --GACAATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTG 4092 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| ||||| || |||||||| || |||| || | |||||| || | | Sbjct 4091 GTGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGTT 4032 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || | || | ||||||||||| | ||| || || || || ||||| Sbjct 4031 CGACCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3980 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | ||| || | || || || || || || |||||||| || ||| Sbjct 3981 ATGCCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCG 3922 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| ||||| || || || || | ||||| || |||||||| || Sbjct 3921 GACAAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 3862 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || |||||||| || || | || | || | |||||| || | ||| Sbjct 3861 GGAATACCTTCCTTGTCTTGAATCTTGGCCTTCA-CGTTCTCAATGGTGTCTGATGGCTC 3803 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || | || | ||||||||||| | ||| || || || || ||||| Sbjct 3802 GACCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3752 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | ||| || | || || || || || || |||||||| || ||| Sbjct 4437 ATGCCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCG 4378 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| ||||| || || || || | ||||| || |||||||| || Sbjct 4377 GACAAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 4318 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || |||||||| || |||| || | |||||| || | |||| Sbjct 4317 GGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGCTCG 4258 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | ||||||||||| | ||| || || || || ||||| Sbjct 4257 ACCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 4208 >seq169730 Length=1905 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||||||||| || || ||||||| || || || || || ||||| || ||||| Sbjct 1900 ATCTTCCAATTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATTCCCTCTTT 1841 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 || ||||| || ||||| ||| | || || || | ||| || || ||||| | Sbjct 1840 GTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACCTCAAGAGTGAT 1781 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || || || ||||| || || ||||| Sbjct 1780 GGTTTTGCCCGTAAGGGTCTTTACGAAGATCTGCAT 1745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451029127453960