Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq6671 132 1e-25 >seq6671 Length=4556 Score = 132 bits (146), Expect = 1e-25 Identities = 158/211 (75%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| || ||||| |||| |||||||| | ||| || | |||||||||| || Sbjct 3727 GTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGACAATGTGCGACCATCTTCCAATTG 3668 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| || |||||||| | |||||| ||||| || ||| |||||| || || || || Sbjct 3667 CTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGGAT-TT 3609 Query 199546 TTGCTTCA-CGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 | |||| | | ||| | ||||| | || || || ||||| ||||| |||||||| | Sbjct 3608 TAGCTTTAACATTTTCAATAGTGTCAGATGGCTCGACTTCCAAGGTGATTGTCTTACCAG 3549 Query 199605 TGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 |||| ||||||||||| ||||| |||||| Sbjct 3548 TGAGTGTTTTCACAAAGATTTG---CATTTT 3521 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| | ||| ||||| ||||| || |||| |||||||| | ||| || Sbjct 3972 CGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAAGGTA 3913 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||| || || ||||| | |||||||||||| ||| ||| ||| Sbjct 3912 CGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCT 3853 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||||||| || | |||||||| || || || ||||| Sbjct 3852 TCCTTGTCTTGAATCTTGGCCTTCACGTTCTCAATGGTGTCTGATGGCTCGACCTCCAAG 3793 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || | ||| || || || || || Sbjct 3792 GTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTG 3755 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| | ||| ||||| ||||| || |||| |||||||| | ||| || Sbjct 4428 CGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAAGGTA 4369 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||| || || ||||| | |||||||||||| ||| ||| ||| Sbjct 4368 CGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCT 4309 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| || || | |||||||| || || || ||||| Sbjct 4308 TCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGCTCGACCTCCAAG 4249 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || | ||| || || || || || Sbjct 4248 GTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTG 4211 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| || || ||||||||||||||||| | || ||| |||| ||||| |||||||| Sbjct 3881 ATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGTACCTTGTCCGACTACAATATCCAGAAA 3940 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||||||||||||| | || ||| | || || Sbjct 3941 GAGTCTACTCTTCACTTGGTCTTGCGTCTACG 3972 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| || || ||||||||||||||||| | || ||| |||| ||||| |||||||| Sbjct 4337 ATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGTACCTTGTCCGACTACAATATCCAGAAA 4396 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||||||||||||| | || ||| | || || Sbjct 4397 GAGTCTACTCTTCACTTGGTCTTGCGTCTACG 4428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176317494445867