Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq6671 134 1e-26 seq169730 87.8 2e-12 >seq6671 Length=4556 Score = 134 bits (148), Expect = 1e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| || || ||||| ||||| || || || |||||| | || |||||| | Sbjct 3521 AAAATGCAAATCTTTGTGAAAACACTCACTGGTAAGACAATCACCTTGGAAGTCGAGCCA 3580 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | ||| |||||| ||||||| |||||||| || ||||| | ||| Sbjct 3581 TCTGACACTATTGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGAC 3640 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 |||||||| | || | ||| ||||| || |||| || | ||||| | ||||||| Sbjct 3641 CAACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACTAC 3700 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || ||||| |||||| | || || || |||||| ||||| Sbjct 3701 AATATCCAGAAGGAATCCACTCTTCACTTGGTGTTGCGT 3739 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||||||||||||| | || ||||| | | Sbjct 3980 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAACCATCA 4039 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || || | ||||| || || ||||| | |||||| Sbjct 4040 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAA 4099 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| || |||| || | ||||| | ||||||||| Sbjct 4100 CAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACTACAAT 4159 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||| | || || || |||||| ||||| Sbjct 4160 ATCCAGAAGGAATCCACTCTTCACTTGGTGTTGCGT 4195 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||||||||||||| | || |||||| | | Sbjct 3752 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAGCCATCA 3811 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || | || || | ||||| || || ||||| | ||||| Sbjct 3812 GACACCATTGAGAACG-TGAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCA 3870 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || ||||| ||| |||| || | ||| ||| | ||||||||| Sbjct 3871 GCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGTACCTTGTCCGACTACAA 3930 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || || | || || || ||||| ||||| Sbjct 3931 TATCCAGAAAGAGTCTACTCTTCACTTGGTCTTGCGT 3967 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||||||||||||| | || |||||| | | Sbjct 4208 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAGCCATCA 4267 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || || | ||||| || || ||||| | ||||| Sbjct 4268 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 4327 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | || ||||| ||| |||| || | ||| ||| | ||||||||| Sbjct 4328 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGTACCTTGTCCGACTACAAT 4387 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || || | || || || ||||| ||||| Sbjct 4388 ATCCAGAAAGAGTCTACTCTTCACTTGGTCTTGCGT 4423 >seq169730 Length=1905 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || |||||||| || || ||||||||||||||||| | || || ||| || Sbjct 1742 AATATGCAGATCTTCGTAAAGACCCTTACGGGCAAAACCATCACTCTTGAGGTTGAGCCC 1801 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | ||| | |||| || || | ||||||||||||||||| | || Sbjct 1802 TCTGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGAT 1861 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGA 38398 |||||||| | || | || |||||||| |||| || Sbjct 1862 CAACAGCGTTTGATATTTGCTGGCAAACAATTGGAAGA 1899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499094921363840