Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq161907 168 3e-36 seq168992 154 6e-32 seq172092 138 4e-27 seq172366 105 3e-17 seq169730 105 3e-17 seq6510 89.7 2e-12 seq79657 84.2 9e-11 >seq161907 Length=3211 Score = 168 bits (186), Expect = 3e-36 Identities = 464/704 (66%), Gaps = 18/704 (3%) Strand=Plus/Plus Query 450902 GTCAAAAAAGTAGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTAC 450961 || |||| ||||||||||| |||||| | || || || | ||||| || || | | Sbjct 2476 GTTAAAATGGTAGCAATTGGCATTGATTTGGGTACAACATACAGCTGTGTTGGCGTCTTC 2535 Query 450962 CAAAATGGAAATGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGG 451021 ||| |||| || || ||||| || ||||| || ||||| || || || || | Sbjct 2536 CAACATGGCAAAGTGGAAATCATTGCAAACGATCAAGGCAATCGCACAACACCCAGCTAT 2595 Query 451022 GTAAGTTTTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAA--TGGTA-- 451075 ||| ||| || || || || | || | || | || || || | ||| || | Sbjct 2596 GTAGCTTTCACAGACTCTGAGCGTCTCATTGGCGATGCGGCGAAGAACCAAGTTGCCATG 2655 Query 451076 AATTCAAATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGAT 451135 ||| ||| || |||||||||| || || |||||||| ||||| || | |||||| Sbjct 2656 AATCCAA--GC----AACACAGTATTCGACGCGAAACGTTTGATTGGTCGCAAATATGAT 2709 Query 451136 GATGATACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGA 451195 ||||| | ||||| || | || || | | | || |||||| | || Sbjct 2710 GATGAGAAAATACAAGCCGACATGAAGCACTGGCCATTCAAGGTGGTAAATGATTGTGGC 2769 Query 451196 AAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATT 451255 || || | || || | | ||||||||| || | || ||||| |||||||| Sbjct 2770 AAACCAAAGCTTAGCGTGGAGTTCAAAGGTGAACAGAAGAAATTCGCTCCAGAAGAAATC 2829 Query 451256 TCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTT 451315 || ||||| | || ||||||||||||||||||||| |||| | || | |||| Sbjct 2830 AGTTCAATGGTGTTGACCAAAATGAAAGAAACAGCAGAAGCATATTTGGGCACAACAGTC 2889 Query 451316 ACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAA 451375 | |||||||| || || || || || ||||||||||| | || || || || || ||| Sbjct 2890 AAGGATGCAGTCATCACAGTGCCAGCCTATTTCAATGACTCGCAGCGTCAGGCCACCAAA 2949 Query 451376 GATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCT 451435 |||||||| || |||||||| ||||| | || ||||| || || || |||||||| Sbjct 2950 GATGCAGGCGCAATAGCTGGTTTGAATGTGTTGCGCATTATCAACGAGCCCACAGCAGCA 3009 Query 451436 GCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTT 451495 || | || ||||| | ||| || | ||| || ||| ||| | || |||| Sbjct 3010 GCATTGGCTTATGG-TTTGGACAAGAATCTGAA--AGGTGAACGCAATGTGCTAATATTC 3066 Query 451496 GATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAAT---TGAAGATGGGGTATTT 451552 ||||| ||||| || || |||| || |||| |||| ||||| | | ||| Sbjct 3067 GATTTGGGTGGTGGCACATTTGATGTGTCCATACTCACAATCGATGAAGGTTCACTGTTT 3126 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 || ||| || || |||||| || || | || |||||||| Sbjct 3127 GAGGTACGTGCTACTGCTGGTGACACGCACTTGGGCGGTGAAGA 3170 >seq168992 Length=1718 Score = 154 bits (170), Expect = 6e-32 Identities = 211/293 (72%), Gaps = 10/293 (3%) Strand=Plus/Plus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 ||||| || |||||||| ||||||||||| |||||| |||| |||||||| ||||||||| Sbjct 467 GATGCCGTCATTACTGTACCCGCTTATTTTAATGATTCACAGCGGCAAGCGACTAAAGAT 526 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 || || |||||||| | ||||| || || || ||||| || || || || |||||| Sbjct 527 GCCGGCTCGATTGCTGGCCTGAATGTGCTGCGCATAATTAACGAGCCCACCGCTGCTGCT 586 Query 451439 CTAGCATATGGACTAG--GAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTG 451496 |||||||||| ||| ||||| ||| | || |||||| || | | |||| Sbjct 587 TTAGCATATGGCTTAGATAAAAATTTGAAG-----GGCGAGAAAAATGTTCTGATCTTTG 641 Query 451497 ATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGG---GGTATTTG 451553 || | ||||| || ||| ||| || |||| | ||||| || || | |||| | Sbjct 642 ATCTGGGTGGTGGCACTTTCGATGTCTCGATACTGACGATTGATGAAGGCTCGCTATTCG 701 Query 451554 AAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 |||| ||| | ||| || ||||| ||| | || ||||| ||| | |||||| Sbjct 702 AAGTTAAGTCCACCGCAGGCGATACGCATTTGGGTGGTGAGGATTTCGATAAT 754 >seq172092 Length=4071 Score = 138 bits (152), Expect = 4e-27 Identities = 136/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 ||||||||||| || || ||| ||| | || ||| || | | ||||| | ||| Sbjct 2845 AAAATGAAAGAGACTGCTGAATCGTATTTGAATTGTCCTGTAAAGAACGCAGTCGTAACT 2786 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 || || || |||||||||||| ||||| ||||||| || |||||||| || || |||||| Sbjct 2785 GTACCAGCATATTTCAATGATTCACAAAGGCAAGCTACAAAAGATGCCGGCCAAATTGCT 2726 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 ||||||||||| | || ||||||||||||| || |||||||| || || ||||| Sbjct 2725 GGTTTAAATGTCTTACGTGTTATTAATGAACCAACGGCAGCTGCCCTGGCTTATGG 2670 >seq172366 Length=6938 Score = 105 bits (116), Expect = 3e-17 Identities = 303/468 (65%), Gaps = 2/468 (0%) Strand=Plus/Plus Query 501058 CGTTTGCTTTCTATTTAGAACCTCATCATGCGGATATATTTGATTTTTTGGAACTACGAA 501117 |||| ||| | ||||| || ||| ||| | ||||| || || ||||| || | || Sbjct 3810 CGTTCGCTATTTATTTGGAGCCTTGGCATTCAGATATTTTCGAGTTTTTAGACTTGAAAA 3869 Query 501118 AAAATACTGGTGCCGAATCAGAAAGAGCCCGTGATTTATTTTTAGCATTATGGGTTTCTG 501177 ||||||| || || | | || || ||||| ||||||| || | ||| || ||| Sbjct 3870 AAAATACAGGAAAAGATGAACACAGGGCGCGTGACTTATTTTACGCTCTCTGGATTCCTG 3929 Query 501178 ACTTATTTATGAATCAGGTTAAATTAAATAATGATTGGTATTTATTTTGTCCAGACAAA- 501236 | | |||||||| | || ||| || || |||| || | ||||| | ||| Sbjct 3930 ATCTTTTTATGAAACGCGTAGAATCTGATGGAGACTGGTCACTAATGTGTCCCCATAAAT 3989 Query 501237 GCACCAGGATTAAATGATGTATATGGAGATGAATATGAAACTCTTTATTGGAAATATGTA 501296 || || || || | ||| | | ||||| |||| ||| | | ||| ||||||| | Sbjct 3990 GCCCCGGGCTTGA-TGAACTTTGGGGAGAAGAATTTGAGAAGTTGTATGAAAAATATGAA 4048 Query 501297 TCAGAAGAAAAATNNNNNNNNNNNNNNAAAGCCCGGAAATTATGGGAAGCTATAATGACA 501356 ||||| ||||| | | | | ||| ||||| || | Sbjct 4049 AAAGAAGGCCGTGCTAATAGAAAAATTAAAGCTCAGTCACTGTGGTTTGCTATCATTGAA 4108 Query 501357 GCACAGTTTGAAACTGGTTCACCCtatatgttatataaagataatattaataaaaaatca 501416 ||||| |||||||||| |||| |||||||||||||| ||| | || | |||| Sbjct 4109 GCACAAGTTGAAACTGGAACACCTTATATGTTATATAAGGATTCTTGCAACAGAAAAAGT 4168 Query 501417 aaccagaaaaatataggaataatTAGAAGTTCAAATTTATGTGCTGAAATTGTAGAATAT 501476 ||||| |||||| | |||| |||| | | ||||| || | ||||||||||||||| Sbjct 4169 AACCAAAAAAATGTTGGAACCATTAAATGCAGCAATTTGTGCACAGAAATTGTAGAATAT 4228 Query 501477 TCAGATTCTACTGAAACAGCTGCTTGTAATTTAGCTTCAATTGCTCTA 501524 |||| | || | ||||| |||||| | || || ||||||||| Sbjct 4229 TCAGCACCGGACGAGATAGCTGTTTGTAACCTGGCGTCTATTGCTCTA 4276 Score = 105 bits (116), Expect = 3e-17 Identities = 295/444 (66%), Gaps = 13/444 (3%) Strand=Plus/Plus Query 502395 ATGCCAACAGCATCTACATCTCAACTATTAGGCAATTATGAATCATTTGAACCATTTACT 502454 ||||| |||||||||||| ||||| | |||| ||| ||||||| |||||||| | ||| Sbjct 4727 ATGCCTACAGCATCTACAGCTCAAATTCTAGGAAATAATGAATCCTTTGAACCGTATACC 4786 Query 502455 TCTAATATATATACTAGAAGAACTTTAGCAGGTGAATTTATAGTTGTTAATAAACATTTA 502514 ||||||||||| || || | |||| | ||||||||| |||||||||| | || | Sbjct 4787 TCTAATATATACACAAGGCGTGTTTTATCTGGTGAATTTCAAGTTGTTAATCATCACCTT 4846 Query 502515 ATAAATGATTTGAATGAAATCGGTGAATGGACTAATGAAATTAGACAAAAAGTAATTA-A 502573 | | ||| | | ||| ||| |||| |||| | || | || ||||| | Sbjct 4847 CTCAGAGATCTTACCGAACTCGAATTATGG---GATGACAATATGAAGAATCAAATTATA 4903 Query 502574 TGA--TAATGGTTCTATTCAAAATATA-TTACTA--CCTAATATAATTAAAAACATCTAT 502628 | | | ||||||||| ||||| ||| |||| ||||| ||| | || | || Sbjct 4904 TCAAGTCGTGGTTCTATACAAAACATAGAAACTATTCCTAAACCCATTCGAGACTTATAC 4963 Query 502629 CAAACTTCATATGAAATGAAACAAAAATATATAAT--AGATGGATGTTCTATACGGGGAG 502686 | || | ||||| | |||| | ||| | |||| || | ||| | |||| Sbjct 4964 AAGACAGTTTGGGAAATTTCAGTTAAATCAACAATTAAAATGGCTGCT-GATA-GAGGAG 5021 Query 502687 CTTATATAGATCAAACCCAATCTATGAATCTTTATTTTGCACAACCAGACTCTCAAAAAT 502746 ||| || ||||||| || || | || || | ||||| |||| ||| | ||| Sbjct 5022 CTTTCATTGATCAAAGTCAGTCGTTTAACATTCACGTTGCAGAACCCAACTATGGAAAGC 5081 Query 502747 TAACTTCCTCTCAATTTTATGCATGGGAACAAGGATTAAAAACAGGGTTATATTATTTAC 502806 | ||||| ||| || ||||| ||| | || | ||||| || | |||||||| | Sbjct 5082 TCACTTCAATTCATTTCTATGCTTGGAAGGCTGGTCTTAAAACTGGAATGTATTATTTGC 5141 Query 502807 GTAGCAAACCATCAGCAAATGCTA 502830 ||| ||| ||| | || ||||||| Sbjct 5142 GTACCAAGCCAGCCGCTAATGCTA 5165 >seq169730 Length=1905 Score = 105 bits (116), Expect = 3e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || || ||||| || |||||||| ||||| | ||| Sbjct 1745 ATGCAGATCTTCGTAAAGACCCTTACGGGCAAAACCATCACTCTTGAGGTTGAGCCCTCT 1804 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | ||| || ||||| || || || ||||||||||| |||||| Sbjct 1805 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGATCAA 1864 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGG 391207 || ||||| || || | || |||||| | |||||||| Sbjct 1865 CAGCGTTTGATATTTGCTGGCAAACAATTGGAAGATGG 1902 >seq6510 Length=41289 Score = 89.7 bits (98), Expect = 2e-12 Identities = 166/236 (70%), Gaps = 12/236 (5%) Strand=Plus/Plus Query 35018 ATTTTCAACAGGATAAAATACAGTTTTAATTCCAGCTTTTTTA-CATCCTGTTATTTTTT 35076 ||||||| | ||| || ||| || || || ||| |||| || || | |||||| Sbjct 22967 ATTTTCATCTGGAATAAGTACGGTAGAAAGCCCCGCTCTTTTGGCAGCCAATAATTTTT- 23025 Query 35077 CTTTTAATCCACCAATTGCAGTAACATTACCTTGAAGATTGATTTCTCCCGTTATA--GA 35134 ||||||| |||||||| || || ||| || | || | | ||| || || ||| || Sbjct 23026 CTTTTAAACCACCAATGGCTAAAATATTGCCACGCAGCGTAACTTCGCCAGTCATACCGA 23085 Query 35135 TATATCATTTGGAATTGGTTTATTACTTAAAAGAGA--ATAAAATGCTAAGGACAAT-GC 35191 ||| | ||||| || || || | |||||| | |||||||| ||| ||| || Sbjct 23086 TATCTGATTTG--ATAGGATTTTC---TAAAAGCGCTGATAAAATGGCAAGCGTAATAGC 23140 Query 35192 TGTACCTGCACTTGGTCCATCTTTAGGAACAGCTCCTTCAGGACAATGAACATGAA 35247 || |||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct 23141 GCCTCCAGCACTTGGTCCATCTTTAGGAACAGCGCCTTCTGGTGCATGAACATGAA 23196 >seq79657 Length=1075 Score = 84.2 bits (92), Expect = 9e-11 Identities = 73/90 (81%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 127434 TTCTTTAAATTTTTGTTCAGCTTCTTGTTTGTTATTTTGATTCTTATCAGGATGATGTTT 127493 |||||||||||||| ||| || |||| ||| || |||| ||||||||||||| ||| Sbjct 34 TTCTTTAAATTTTTCTTCTGCCTCTT---TGTCATCCGGATTTTTATCAGGATGATATTT 90 Query 127494 AACAGCTAATTTACGGTAAGCTTTTTTAAT 127523 | ||||||||| ||||| |||||||| || Sbjct 91 GATAGCTAATTTTCGGTATGCTTTTTTTAT 120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1971354259705308