Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq168992 324 2e-83 seq161907 203 4e-47 seq20905 181 1e-40 seq172092 102 1e-16 seq72806 95.1 2e-14 seq88972 82.4 1e-10 >seq168992 Length=1718 Score = 324 bits (358), Expect = 2e-83 Identities = 955/1446 (66%), Gaps = 37/1446 (3%) Strand=Plus/Minus Query 6557 TTCGCGTACTTTT-CATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAAT 6615 ||||||| |||| |||| ||||| || || ||| || || | | ||| ||||| Sbjct 1651 TTCGCGTTGTTTTTCATCATCATCCTTGTAACGTTCGGCCTCCTCTAACATACGGTCAAT 1592 Query 6616 GTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGA 6675 || | ||||| || | ||||| ||||| |||||||| ||||| || ||||| || | Sbjct 1591 TTCGGCCTTCGACAAACGACCCTTGTCATTTGTAATCGTTATCTTCTCCGATTTGCCAGT 1532 Query 6676 GGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATT 6735 | || || | ||| |||||||| || |||| |||| | |||||| || | Sbjct 1531 GCTATTGTCCTTAGCCGACACATTCAATATGCCATCGGCATTCATATCGAAAGCAACCTC 1472 Query 6736 AATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAA 6795 |||| ||| || | |||||| | || || || || |||| |||||| || | | Sbjct 1471 GATTTTTGGCACGCCACGCGGTGCTGGCGGTATGCCAGTCAAATTAAATGTGCCCAAGAG 1412 Query 6796 ACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTG 6855 | | || || | | | || ||| ||||| || ||||||| || || |||||| || Sbjct 1411 ATTATTGTCTTTGGTCATCGCACGCTCACCCTCGTAGACTTGGATGGTGACCGCATTCTG 1352 Query 6856 ATTATCT-TGTGCCGTTGAGAAGATTTGTT-CTTTCTTAGATGGAATCGTCGTATTTCTC 6913 ||| || ||| |||| ||| ||||| | || ||| |||| || || ||| | | Sbjct 1351 ATTGTCGCTGTAG-GTTGTGAAAATTTGCTGCTGTCTGC-ATGGTATACGCGCATTACGC 1294 Query 6914 GGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACG 6973 ||| | | ||||||| ||| || ||||| | || | |||||| |||| || Sbjct 1293 TCAATCAGCTTCGTCATAACACCGCCAGCCGTTTCTATGCCCAAAGACAGCGGTGCTACA 1234 Query 6974 TCCAAGAGTAACAGGTCTTGAACAGATTCGT----TCCCTTCACCCGTTAAGATGGCGGC 7029 || | || || | ||||| |||| | | || | || || || ||||| || Sbjct 1233 TCGACTAGCAATACATCTTG----GATTTGCGAACTACCAACGCCTGTCAAAATGGCCGC 1178 Query 7030 TTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTT 7089 ||| || | || || || || |||||||||||||| ||||| | |||| || || Sbjct 1177 TTGCACAGCAGCGCCATAGGCCACCGCCTCATCGGGATTAATGGACAAGTTCAATTGCTT 1118 Query 7090 ACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGAC 7149 || || | ||| | ||||| |||||||| || || ||||| || || || || Sbjct 1117 GCCACAGAAGAAGTCCTGCAGCATTTTCTGAATTTTAGGTATGCGTGTTGAGCCGCCCAC 1058 Query 7150 CAAAACGATTTCATTCACTTTCGAT-TTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGA 7208 || || | |||| | || | | || || || || | ||| | || || | Sbjct 1057 CAGCACCACCTCATGTA-TTGAGCTCTTGTCCATTTTGGCGTCGGTCAATGCACGCTCTA 999 Query 7209 CAGGTTCCATACATTTA-CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTA 7267 | || | || || | | |||||||| ||||| || |||||||||||||||||| || Sbjct 998 CTGGCTGCA-ACGTCGAGCGGAACAAATCCATGTTCATTTCCTCAAAACGTGCACGCGTG 940 Query 7268 ATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTT-CAATG-GTTGTTTGTG 7325 || | |||||||||||| || || | || | ||| |||| ||||| | | |||| Sbjct 939 ATTTTCGAATAGAAATCAACACCCTCATGCAATGCATCGATTTCCAATGAGGCTTCTGTG 880 Query 7326 CCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCAC 7385 | | ||||| | ||| ||||| || |||||||| || || || || | ||| | ||| | Sbjct 879 C--TGGAAGAGAGCGTGCGCTTAGCACGCTCACAAGCTGTGCGCAATCTACGCAAGGCGC 822 Query 7386 GCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAA 7445 || || || || || || || | || || || ||||| || || || | Sbjct 821 GCACATTCTTTGACATGTCCTTTTTGTACTTGCGCTTGAACTCGTCCACAAAATGATTCA 762 Query 7446 GGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTT 7505 | | ||||||||| ||||||||||| || ||||| || ||||| | || |||| Sbjct 761 CCAAACGATTATCGAAATCCTCACCACCCAAATGCGTATCGCCTGCGGTGGACTTAACTT 702 Query 7506 CAAAGA---TACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGT 7562 | || | ||| | ||||| | | | ||| ||||| || || ||||||||||| | Sbjct 701 CGAATAGCGAGCCTTCATCAATCGTCAGTATCGAGACATCGAAAGTGCCACCACCCAGAT 642 Query 7563 CAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCG 7622 |||| || || || || | ||| | | || ||||| | || || || | ||| | Sbjct 641 CAAAGATCAGAACATTTTTCTCGCCCTTCAAATTTTTATCTAAGCCATATGCTAAAGCAG 582 Query 7623 CCGCCGTTGGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCT 7681 | || || || || ||||| || || || ||| |||||||||||||| | | |||||| Sbjct 581 CAGCGGTGGGCTCGTTAATTATGCGCAGCACA-TTCAGGCCAGCAATCGAGCCGGCATCT 523 Query 7682 TTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTG 7741 || |||||||| || || ||||| ||||| || || || || || | ||| || || Sbjct 522 TTAGTCGCTTGCCGCTGTGAATCATTAAAATAAGCGGGTACAGTAATGACGGCATCGCGC 463 Query 7742 ACTTTCTTACCGA--GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATG 7799 ||||| ||| | |||| |||||| | || |||||| || || ||||| || Sbjct 462 ACTTTGCCACCCAAGAATAC--TTCCGCAACCTCACGCATTTTCGTTAGCACCATTGAGC 405 Query 7800 AAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTT 7859 ||||| || | |||||| |||| ||||| || || ||||| ||||| | || | Sbjct 404 TTATCTCCTCGGGCGCAAAACGTTTGCGCTCACCCTTGAACTCAACCTCAATTTTTGGCT 345 Query 7860 TATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTT 7919 || |||| | | ||| |||||| | | ||| | || || || | ||| | | | Sbjct 344 TA-CCGC--CGTCATTGATCACCTTAAATGGCCAGTGCTTGATGTCCTGTTGTATTTTCT 288 Query 7920 GGTC--CGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTT 7977 || ||||| | || || ||||| |||||||| || || ||||| | | ||| Sbjct 287 TATCATCGAAA--CGACGGCCAATTAGACGTTTTGCATCGAAGACAGTGTTCTGAGCGTT 230 Query 7978 CATGGC 7983 ||| || Sbjct 229 CATAGC 224 >seq161907 Length=3211 Score = 203 bits (224), Expect = 4e-47 Identities = 473/702 (67%), Gaps = 21/702 (3%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGAT---A 7513 ||||| |||||||| |||||||| || || || || || || || ||||| | | Sbjct 3176 TCGAAGTCTTCACCGCCCAAGTGCGTGTCACCAGCAGTAGCACGTACCTCAAACAGTGAA 3117 Query 7514 CCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 ||| | || || | | | || |||||||| || |||||||||| || || || || Sbjct 3116 CCTTCATCGATTGTGAGTATGGACACATCAAATGTGCCACCACCCAAATCGAATATTAGC 3057 Query 7574 ACGTT-CGTATCGTCGTCTTTG---TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGT 7629 || || ||| || |||| ||||| || | ||| || || | || || || || Sbjct 3056 ACATTGCGT----TCACCTTTCAGATTCTTGTCCAAACCATAAGCCAATGCTGCTGCTGT 3001 Query 7630 TGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCG 7688 || || || ||||| || || ||| |||| ||||| || | | |||||||| || | Sbjct 3000 GGGCTCGTTGATAATGCGCAACACA-TTCAAACCAGCTATTGCGCCTGCATCTTTGGTGG 2942 Query 7689 CTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCT 7748 | || || ||||| || || || ||||| || || || | ||| || ||| ||||| | Sbjct 2941 CCTGACGCTGCGAGTCATTGAAATAGGCTGGCACTGTGATGACTGCATCCTTGACTGTTG 2882 Query 7749 TACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTT 7808 | || | ||| | ||| || | |||||||||||||| | ||||| || || |||| Sbjct 2881 TGCCCAAATATGCTTCTGCTGTTTCTTTCATTTTGGTCAACACCATTGAACTGATTTCTT 2822 Query 7809 CAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAG 7868 | | || || | ||| |||||| || || || || || | | ||||| || || Sbjct 2821 CTGGAGCGAATTTCTTCTGTTCACCTTTGAACTCCACGCTAAGCTTTGGTTT-GCCACA- 2764 Query 7869 CACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAA 7928 | | | ||||| | | ||| | ||||| ||| |||| | | | || | Sbjct 2763 -ATCATTTACCACCTTGAATGGCCAGTGCTTCATGTCGGCTTGTATTTTCTCATCATCAT 2705 Query 7929 ACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTT 7988 | || | || || | ||| || || || || |||||||| | || |||||||| || Sbjct 2704 ATTTGCGACCAATCAAACGTTTCGCGTCGAATACTGTGTTGCTTGGATTCATGGCAACTT 2645 Query 7989 GGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATG 8048 ||||||||||||| || || || ||||| || | || || || || || || | || Sbjct 2644 GGTTCTTCGCCGCATCGCCAATGAGACGCTC---AGAGTCTGTGAAAGCTACATA-GCTG 2589 Query 8049 GG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 || || || ||||| ||||| ||||| ||||| ||||| || | | | ||| ||||| Sbjct 2588 GGTGTTGTGCGATTGCCTTGATCGTTTGCAATGATTTCCACTTTGCCATGTTGGAAGACG 2529 Query 8108 CCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCT 8149 || || || || ||||| || |||||||| || |||||| Sbjct 2528 CCAACACAGCTGTATGTTGTACCCAAATCAATGCCAATTGCT 2487 >seq20905 Length=4861 Score = 181 bits (200), Expect = 1e-40 Identities = 392/576 (68%), Gaps = 18/576 (3%) Strand=Plus/Plus Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGA 7302 ||| ||||| || || || || ||||||||||| ||||| || | ||||||| | ||| Sbjct 2638 CAGCTCCTCGAAGCGGGCGCGCGTAATGGATGTGTAGAAGTCGATGCCGTCGAGCAGCGA 2697 Query 7303 ATCAATTTCAATGGTTGTTTGTGCCGTCGAAG---ATAACGTTCGCTTTGCGCGCTCACA 7359 ||||| |||||| | | || ||| |||| | | ||| ||||| |||||||| || Sbjct 2698 GTCAATCTCAATGCTGGCCTG---CGTTGAAGCCGACAGCGTGCGCTTGGCGCGCTCGCA 2754 Query 7360 CGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACG 7419 || || || | || || || || ||| || || | ||||||||| || || Sbjct 2755 AGCAGTGCGCAGCCGCCGCAGCGCGCGCTTATTCGGTGACAAATCTTTCTTGAACTTGCG 2814 Query 7420 TTTAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGA--ATCGAAATCTTCACCACCCAA 7476 | || |||| ||| || | || | ||| ||| || || ||||||||||| Sbjct 2815 CTGGAATTCTTGCACGAAATGGTTGACCATG---CGATTATCAAAGTCCTCACCACCCAA 2871 Query 7477 GTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGA 7536 |||||| || || || || || || || || || || || | |||||| | | | || Sbjct 2872 GTGTGTGTCGCCGGCTGTGGCCTTCACCTCGAATATGCCATCCTCAATGGTGAGTATGGA 2931 Query 7537 AACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG-TCGT-CTTTG 7594 ||||| || || || ||||| || || || || | || || ||| | || | || Sbjct 2932 GACATCGAATGTGCCGCCACCGAGATCGAATATCAACACATTGCGCTCGCTGGTGCCCTG 2991 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653 ||| || || || || ||||| || |||||||| || || || || || || || ||| Sbjct 2992 --CTTGTCCAGCCCATAGGCGATTGCGGCCGCCGTGGGCTCGTTGATGATGCGCAGCACA 3049 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || || || ||||| | ||||||| || ||||| || || ||||| || || ||||| Sbjct 3050 -TTGAGACCCGCAATGGCACCCGCATCCTTTGTCGCCTGACGCTGCGAGTCATTGAAGTA 3108 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 ||| || || || || ||||| || ||||| | || | ||| ||||| || | || Sbjct 3109 GGCTGGTACGGTGACCACCGCATCGGTGACCTGGCGCCCCAAATATGATTCGGCAGTTTC 3168 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||| || || || ||||| || || |||||||| Sbjct 3169 GCGCATCTTTGTCAGCACCATTGACGAGATCTCTTC 3204 >seq172092 Length=4071 Score = 102 bits (112), Expect = 1e-16 Identities = 138/187 (74%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 7598 TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACAGTT 7656 ||||| | ||| || || | || || ||||||||||||||||||| ||| |||||| || Sbjct 2661 TTATCCATACCATAAGCCAGGGCAGCTGCCGTTGGTTCATTAATAACACGTAAGACA-TT 2719 Query 7657 CAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGG 7715 | |||||||| | ||| |||||||| || ||||| | ||| ||||| || || || | Sbjct 2720 TAAACCAGCAAT-TTGGCCGGCATCTTTTGTAGCTTGCCTTTGTGAATCATTGAAATATG 2778 Query 7716 CCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTT 7775 | || || |||||||| |||| | | || | | ||||||||| || | |||| Sbjct 2779 CTGGTACAGTTACGACTGCGTTCTTTACAGGACAATTCAAATACGATTCAGCAGTCTCTT 2838 Query 7776 TCATTTT 7782 ||||||| Sbjct 2839 TCATTTT 2845 >seq72806 Length=23617 Score = 95.1 bits (104), Expect = 2e-14 Identities = 184/266 (69%), Gaps = 13/266 (5%) Strand=Plus/Plus Query 11233 ATTTCTTCACGTCCGTGAACATCAGGTAAAGAAACTTGTATTTTACGATCAAATCTACCG 11292 || |||||||| || | ||||||||||| | ||||| | || ||||||||||| ||| Sbjct 14012 ATCTCTTCACGACCTTTCACATCAGGTAATGGAACTTCAACTTGACGATCAAATCGACCT 14071 Query 11293 GGGCGTAATAACGCATCGTCGAGTATATCGATACGGTTTGTTGCACCTATA---ACAACA 11349 || ||||| | |||| || | | ||| |||||||| ||| | ||| ||||| Sbjct 14072 GGACGTAAAAGCGCAGGATCTAAAACATCAGGGCGGTTTGTAGCAGCAATAATCACAACG 14131 Query 11350 ATTTCAGTTTCATTCTCGAAACCATCCATTTCTGTTAATAATTGGTTAATTGTTTGTTCA 11409 || | | ||| | || || |||||||| ||| | |||||| | |||||| ||| Sbjct 14132 CCTTGATTATCACT---AAAGCCGTCCATTTCAACTAACATTTGGTTTAATGTTTGCTCA 14188 Query 11410 CGCTCATCGT--TTGCCGCAAAC-CCATTCATACT--TCTTTTCTTACCAATCGCATCAA 11464 || ||||||| |||| ||| ||| | | || | | ||| | ||||| | Sbjct 14189 CGTTCATCGTGACCACCGCCAACACCA--CCTGCTCCACGCTGACGACCGACAGCATCGA 14246 Query 11465 TTTCATCTATAAAGATAATACACGGT 11490 ||||||| ||||| |||||||| ||| Sbjct 14247 TTTCATCAATAAAAATAATACATGGT 14272 >seq88972 Length=1669 Score = 82.4 bits (90), Expect = 1e-10 Identities = 205/311 (66%), Gaps = 3/311 (1%) Strand=Plus/Minus Query 11254 TCAGGTAAAGAAACTTGTATTTTACGATCAAATCTACCGGGGCGTAATAACGCATCGTCG 11313 || |||||| ||| |||| | |||||||| | ||| || | | ||| || | || Sbjct 1657 TCTGGTAAATCAACATGTACCATCCGATCAAAACGACCAGGTCTTGTTAAAGCTTTATCC 1598 Query 11314 AGTATATCGATACGGTTTGTTGCACCTATAACAACAATTTCAGTTTCATTCTCGAAACCA 11373 | ||||||| | || || || | || |||| | | || ||| | | || ||| Sbjct 1597 AATATATCGGCTCTATTAGTAGCTGCAATCACAATTACATTAGATTCTGTTCCAAAGCCA 1538 Query 11374 TCCATTTCTGTTAATAATTGGTTAATTGTTTGTTCACGCTCATCGTTTG---CCGCAAAC 11430 |||||||| || || | || || | ||| | ||| | |||||| || | | | ||| Sbjct 1537 TCCATTTCAGTCAAAAGCTGATTTAATGTATTTTCTCTCTCATCATTAGAACCTGAAAAA 1478 Query 11431 CCATTCATACTTCTTTTCTTACCAATCGCATCAATTTCATCTATAAAGATAATACACGGT 11490 | | | |||| ||||||| |||||||||||||||||||| ||||| | || Sbjct 1477 TTAGATTTTCCTCTTGATCTACCAATAGCATCAATTTCATCTATAAATATAATCGAAGGA 1418 Query 11491 TGATTTTCACGTGCCAATTCAAATATATCACGGACTCTTTTTGCGCCTACGCCTACAAAC 11550 ||||| ||| || ||||| ||| | || | || || || ||||||||| Sbjct 1417 GATTTTTCTTTTGCATTTTTAAATAAATCTCTAACGCGAGAAGCCCCAACTCCTACAAAC 1358 Query 11551 ATTTCAACGAA 11561 |||||||| || Sbjct 1357 ATTTCAACAAA 1347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633764080876840