Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq172366 107 2e-18 >seq172366 Length=6938 Score = 107 bits (118), Expect = 2e-18 Identities = 435/677 (64%), Gaps = 15/677 (2%) Strand=Plus/Plus Query 112305 GAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 112364 || ||||| ||||| |||||| | || || || | || ||| ||| ||||| ||||| Sbjct 4118 GAAACTGGAACACCTTATATGTTATATAAGGATTCTTGCAACAGAAAAAGTAACCAAAAA 4177 Query 112365 AATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAA 112424 ||| | || || || | ||| | || |||||||| | |||| | ||| Sbjct 4178 AATGTTGGAACCATTAAATGCAGCAATTTGTGCACAGAAATTGTAGAATATTCAGCACCG 4237 Query 112425 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAG 112484 || |||| ||||| |||||||| || || || ||||| || || ||| | | | Sbjct 4238 GACGAGATAGCTGTTTGTAACCTGGCGTCTATTGCTCTAAACATGTTTGT---TTCTGCT 4294 Query 112485 ACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTA 112544 | |||| ||||| | | |||| || | |||||||| ||||| || |||||||| | Sbjct 4295 AATAAGATTTTTGACTTTCAAAAGCTTAAAGAAGTTACAAAAACAGTTACAAAAAATTTG 4354 Query 112545 AACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGA 112604 || | | | || |||| |||| ||| || || ||| ||||| ||||||||| Sbjct 4355 AATAAAATCATAGATATCAATTATTATCCTCTTCCCGAAGCTAAGAAATCAAATATGAGA 4414 Query 112605 CACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCAC 112664 || || || || || | || || || || |||| |||| | | || || || || Sbjct 4415 CATCGACCCATAGGAATTGGGGTTCAGGGCTTCGCTGATGCACTAATACTGATGCGTTAC 4474 Query 112665 GCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCAC 112724 ||| ||| || |||| | | | ||| | |||||||| ||||| || | Sbjct 4475 CCATATGAAAGTGAGCAAGCATATTTATTAAATATCCAAATATTTGAAACAATCTACTAT 4534 Query 112725 GCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAG 112784 | || | ||||| || | || || || || | || || |||||| | | ||| Sbjct 4535 GGGGCATTAGAGGCTAGCTGCGAATTAGCGGAAATGTTAGGGCCTTATGAATCATATGAA 4594 Query 112785 GGTTCTCCAGCTTCACAA-GGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA--- 112840 || ||| | | ||| ||||| | |||| || ||||||| | || | ||||| Sbjct 4595 GGGAGTCCTG-TAAGCAACGGGGTATTGCAATACGACATGTGGG-ACGTTACACCAACAG 4652 Query 112841 GCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAG 112900 ||| | || ||| | ||| | ||||| || | | ||| | || | | Sbjct 4653 ACTT--GTGGGATTGGAATGCTTTGAAGGAGAAAATTTCCAAACATGGTGTACGGA--AT 4708 Query 112901 TCTTT--TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 112958 ||||| | | || || ||||| ||||| || || || ||||| | || ||||||||| Sbjct 4709 TCTTTACTTGTTGCTCCTATGCCTACAGCATCTACAGCTCAAATTCTAGGAAATAATGAA 4768 Query 112959 TGCTTTGAACCCTACAC 112975 | ||||||||| || || Sbjct 4769 TCCTTTGAACCGTATAC 4785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619404692368720