Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq172366 118 1e-21 >seq172366 Length=6938 Score = 118 bits (130), Expect = 1e-21 Identities = 439/680 (65%), Gaps = 21/680 (3%) Strand=Plus/Minus Query 105947 GTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 106006 || || ||||||||| |||||||||| || | ||||| || || || ||||| ||||| Sbjct 4785 GTATACGGTTCAAAGGATTCATTATTTCCTAGAATTTGAGCTGTAGATGCTGTAGGCATA 4726 Query 106007 GGTGCCATCA--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACAT 106064 || || | | ||||| | | || | ||| | || || ||||| | | ||| Sbjct 4725 GGAGCAACAAGTAAAGAAT--TCCGTACACCATGTTTGGAAATTTTCTCCTTCAAAGCAT 4668 Query 106065 CCCAGTCGTA---GT-TGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCT 106120 ||| || | || || ||||| | || | ||||||| || |||| | ||||| Sbjct 4667 TCCAATCCCACAAGTCTG---TTGGTGTAACGT-CCCACATGTCGTATTGCAATACCCCG 4612 Query 106121 TGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAG 106180 | | ||| || ||| ||| ||||| | ||| ||| || ||||| ||| Sbjct 4611 TTGCTTACAGGACTCCCTTCATATGATTCATAAGGCCCTAACATTTCCGCTAATTCGCAG 4552 Query 106181 CTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCT 106240 || ||||| | | | | || || |||||||| || | ||| | | ||| Sbjct 4551 CTAGCCTCTAATGCCCCATAGTAGATTGTTTCAAATATTTGGATATTTAATAAATATGCT 4492 Query 106241 TCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCC 106300 | || ||| ||| ||| || || || | | |||| |||| || ||||| || Sbjct 4491 TGCTCACTTTCATATGGGTAACGCATCAGTATTAGTGCATCAGCGAAGCCCTGAACCCCA 4432 Query 106301 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC---AACGGGATAAAAA 106357 | || || |||| |||| |||||| || || | || || || |||||| || Sbjct 4431 ATTCCTATGGGTCGATGTCTCATATTTGATTT---CTTAGCTTCGGGAAGAGGATAATAA 4375 Query 106358 TTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTT 106417 || | || |||| | || | |||||| ||||| | ||||| | ||| | ||| ||| Sbjct 4374 TTGATATCTATGATTTTATTCAAATTTTTTGTAACTGTTTTTGTAACTTCTTTAAGCTTT 4315 Query 106418 TCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAA 106477 | | | |||||| | | | | | ||| || | || || || || |||| Sbjct 4314 TGAAAGTCAAAAATCTTATTAGCAGAA---ACAAACATGTTTAGAGCAATAGACGCCAGG 4258 Query 106478 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAA 106537 || |||||||| |||| ||| ||| || |||| ||||||||| ||||| ||| Sbjct 4257 TTACAAACAGCTATCTCGTCCGGTGCTGAATATTCTACAATTTCTGTGCACAAATTGCTG 4198 Query 106538 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGC 106597 | ||||| || || | ||| ||||||||||| ||| ||||||| | |||||| || | | Sbjct 4197 CATTTAATGGTTCCAACATTTTTTTGGTTACTTTTTCTGTTGCAAGAATCCTTATATAAC 4138 Query 106598 ATGTAGGGCGTCCCCGTCTC 106617 || || || || || || || Sbjct 4137 ATATAAGGTGTTCCAGTTTC 4118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588709384001240