Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq6671 163 6e-35 seq76123 89.7 1e-12 >seq6671 Length=4556 Score = 163 bits (180), Expect = 6e-35 Identities = 166/214 (78%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCAT 194986 ||| || | ||||||||| |||||||| || |||||||| |||| |||| || | ||||| Sbjct 3964 CAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAAG-GTACGCCCAT 3906 Query 194987 CTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGT 195046 |||| | |||||| || || ||||| | || || |||||||||||||| ||||| |||| Sbjct 3905 CTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGT 3846 Query 195047 CTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCG 195106 ||||||| || ||| ||||||||||||||||| || || || || | ||| | | Sbjct 3845 CTTGAATCTTGGCCTTCACGTTCTCAATGGTGTCTGATGGCTCGACCTCCAAGGTGATGG 3786 Query 195107 TCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || |||||||| || ||||| | ||||| Sbjct 3785 TTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3752 Score = 163 bits (180), Expect = 6e-35 Identities = 166/214 (78%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCAT 194986 ||| || | ||||||||| |||||||| || |||||||| |||| |||| || | ||||| Sbjct 4420 CAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAAG-GTACGCCCAT 4362 Query 194987 CTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGT 195046 |||| | |||||| || || ||||| | || || |||||||||||||| ||||| |||| Sbjct 4361 CTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGT 4302 Query 195047 CTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCG 195106 ||||||| || |||||| |||||||||||||| || || || || | ||| | | Sbjct 4301 CTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGCTCGACCTCCAAGGTGATGG 4242 Query 195107 TCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || |||||||| || ||||| | ||||| Sbjct 4241 TTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 4208 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | |||||||||||| || || || |||||||| |||| | || | ||||| Sbjct 4192 CAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGACAATGTGCGACCATC 4133 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||||| || |||||||| | || ||||||||||| ||||| ||||| ||||| Sbjct 4132 TTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGAATACCTTCCTTGTC 4073 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||| || |||||| |||||||||||||| || ||| || || | ||| | || Sbjct 4072 TTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGTTCGACCTCCAAGGTGATGGT 4013 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||||||| || ||||| | ||||| Sbjct 4012 TTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3980 Score = 140 bits (154), Expect = 7e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | |||||||||||| || || || |||||||| |||| | || | ||||| Sbjct 3736 CAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGACAATGTGCGACCATC 3677 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||||| || |||||||| | || ||||||||||| ||||| ||||||||||| Sbjct 3676 TTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGAATACCTTCTTTGTC 3617 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| ||||| || || || ||||| ||||| || || ||||| | ||| | || Sbjct 3616 TTGGATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGCTCGACTTCCAAGGTGATTGT 3557 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| || || | ||||| || || | |||||||| Sbjct 3556 CTTACCAGTGAGTGTTTTCACAAAGATTTGCATTT 3522 >seq76123 Length=2128 Score = 89.7 bits (98), Expect = 1e-12 Identities = 126/179 (70%), Gaps = 10/179 (6%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| || ||||||||||| || || || |||| | || | |||||||| Sbjct 1006 ACCAGATGAAGTGTCGACTCTTTTTGGATGTTATAGTCGGATAATGTGCGTCCATCTTCC 1065 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||||| || || || | ||||| || ||||| ||||| |||||||| ||||| Sbjct 1066 AATTGCTTACCAGCAAAAATTAAACGTTGCTGATCTGGTGGAATACCTTCTTTATCTTG- 1124 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 | || | ||| ||||| || || ||||||||| | ||||| ||||| Sbjct 1125 ---------NTAACATGCTCGATGGTATCGAAAGGTTCCACTTCCAAGGTAATGGTCTT 1174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1107030879615567