Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq6671 95.1 8e-15 seq169730 91.5 1e-13 >seq6671 Length=4556 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||||| || |||||||| || || ||||| || | | | || |||| Sbjct 4420 CAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAAGGTACGCCCATC 4361 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| ||| || || ||||| || | || ||||||||| | || | || |||||||| Sbjct 4360 TTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTC 4301 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 |||||| ||||| || || || | || | ||| || || | ||| ||| Sbjct 4300 TTGAATCTTGGCCTTGAC--ATTCTCAATGGTGTCTGATGGCTCGACCTCCAAGGTGATG 4243 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || || | |||||| || ||||||||||| Sbjct 4242 GTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 4208 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||||| || |||||||| || || ||||| || | | | || |||| Sbjct 3964 CAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAAGGTACGCCCATC 3905 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| ||| || || ||||| || | || ||||||||| | || | || |||||||| Sbjct 3904 TTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTC 3845 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| || ||| | || | || | ||| || || | ||| ||||| Sbjct 3844 TTGAATCTTGGCCTTCACGTTCTCAATGGTGTCTGATGGCTCGACCTCCAAGGTGATGGT 3785 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || || | |||||| || ||||||||||| Sbjct 3784 TTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3752 >seq169730 Length=1905 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 34825 CATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34884 |||| |||| ||||| || |||||||| | || || || ||| | || | ||||| | Sbjct 1901 CATCTTCCAATTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATTCCCTCTT 1842 Query 34885 TGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTA 34944 |||| |||||| |||||| | | || | ||| || |||||| || | || | Sbjct 1841 TGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACCTCAAGAGTGA 1782 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||||| ||||| || ||||| || |||||||||||||| Sbjct 1781 TGGTTTTGCCCGTAAGGGTCTTTACGAAGATCTGCATATT 1742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323951500270728