Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq172366 479 3e-130 >seq172366 Length=6938 Score = 479 bits (530), Expect = 3e-130 Identities = 1237/1880 (66%), Gaps = 28/1880 (1%) Strand=Plus/Minus Query 46973 tttttCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || |||||||| | || | |||| |||| || || || ||||||||||| || Sbjct 5185 TTTATCAACAGTAAATTGTATAGCATTAGCGGCTGGCTTGGTACGCAAATAATACATTCC 5126 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 ||| || | ||| |||| |||||||||| || ||| | || ||| | || Sbjct 5125 AGTTTTAAGACCAGCCTTCCAAGCATAGAAATGAATTGAAGTGAGCTTTCCATAGTTGGG 5066 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 ||||| || ||||| |||| || ||||| |||||||| || || ||||||||||| || Sbjct 5065 TTCTGCAACGTGAATGTTAAACGACTGACTTTGATCAATGAAAGCTCCTCTATCAGCAGC 5006 Query 47153 CATATCTAAAATAACCCTTTG--TGGTATCTCCCATACTGTTTTATAAATTTGTTTAATG 47210 ||| | || | ||| || || ||||| ||||| || || | | | |||| Sbjct 5005 CATTTT--AATTGTTGATTTAACTGAAATTTCCCAAACTGTCTTGTATAAGTCTCGAATG 4948 Query 47211 TCTTCTGGGAGA-TTAGTAT--TTTGAATAGATCCTCCgttttctataattttgtttttt 47267 || || | | || ||| |||| ||||| || | || |||||||| || || Sbjct 4947 GGTTTAGGAATAGTTTCTATGTTTTGTATAGAACCACGACTTGATATAATTTGATTCTTC 4888 Query 47268 a-att--catttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACA 47324 | ||| ||| ||| | || |||| || | | | | ||| ||| |||||||| Sbjct 4887 ATATTGTCATC---CCATAATTCGAGTTCGGTAAGATCTCTGAGAAGGTGATGATTAACA 4831 Query 47325 ATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATA 47384 | ||||||||| ||||||| || | | | ||||||||| ||||| ||||| | Sbjct 4830 ACTTGAAATTCACCAGATAAAACACGCCTTGTGTATATATTAGAGGTATACGGTTCAAAG 4771 Query 47385 GATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAG 47444 |||||||||||||| | ||||||||| || |||||||||||||| | ||||| | ||| Sbjct 4770 GATTCATTATTTCCTAGAATTTGAGCTGTAGATGCTGTAGGCATAGGAGCAACAAGTAAA 4711 Query 47445 CTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCT 47504 ||| | ||| |||| ||| || | ||||||||||| | ||| Sbjct 4710 GAATTCCGTACACCATGTTTGGAAATTTTCTCCTTCAAAGCATTCCAATCCCACAAGTCT 4651 Query 47505 GATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTA 47564 | ||| ||| | ||| | || ||||| | | || || |||| ||| || | | Sbjct 4650 GTTGGTGTAACGTCCCACATGTCGTATTGCAATACCCCGTTGCTTACAGGACTCCCTTCA 4591 Query 47565 TATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAA 47624 |||| || |||||| || | | || || | ||| || || || || ||||| | ||| Sbjct 4590 TATGATTCATAAGGCCCTAACATTTCCGCTAATTCGCAGCTAGCCTCTAATGCCCCATAG 4531 Query 47625 TATATTGTTTCAAATATTTTTATGTTTAGATTCCT-TGCTT-CTGATGATTCAAAAGGAT 47682 || |||||||||||||||| || |||| || | ||||| || | |||| | || | Sbjct 4530 TAGATTGTTTCAAATATTTGGATATTTA-ATAAATATGCTTGCTCACT-TTCATATGGGT 4473 Query 47683 ANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAG 47742 | | || ||| || || || ||||| ||||| || || |||| ||| Sbjct 4472 AACGCATCAGTATTAGTGCATCAGCGAAGCCCTGAACCCCAATTCCTATGGGTCGATGTC 4413 Query 47743 TTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTA 47802 | |||| || || |||||| || | ||||| | || |||||||| |||||||| | Sbjct 4412 TCATATTTGATTTCTTAGCTTCGGGAAGAGGATAATAATTGATATCTATGATTTTATTCA 4353 Query 47803 GANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTTA 47862 | || |||| | | || | ||| ||||| | ||||| Sbjct 4352 AATTTTTTGTAACTGTTTTTGTAACTTCTTTAAGCTTTTGAAAGTCAAAAATCTTATTAG 4293 Query 47863 TA---ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGAT 47919 | |||||| | || || || ||||| || || ||||| ||||||| ||| | || Sbjct 4292 CAGAAACAAACATGTTTAGAGCAATAGACGCCAGGTTACAAACAGCTATCTCGTCCGGTG 4233 Query 47920 TAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGAT 47979 | ||||| || ||||| | || | ||| | ||||| || || || | ||||| | Sbjct 4232 CTGAATATTCTACAATTTCTGTGCACAAATTGCTGCATTTAATGGTTCCAACATTTTTTT 4173 Query 47980 GATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCT 48039 | ||| | |||| || | ||||| || | |||| |||||||||||||||| | | Sbjct 4172 GGTTACTTTTTCTGTTGCAAGAATCCTTATATAACATATAAGGTGTTCCAGTTTCAACTT 4113 Query 48040 GAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTAT 48099 | | ||||||||||| ||| | | | ||| || || |||| | Sbjct 4112 GTGCTTCAATGATAGCAAACCACAGTGACTGAGCTTTAATTTTTCTATTAGCACGGCCTT 4053 Query 48100 CATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAG 48159 | | ||| ||||| ||| |||||||||||||| || || | | | ||| | ||| | Sbjct 4052 CTTTTTCATATTTTTCATACAACTTCTCAAATTCTTCTCCCCAAAGTTCATCAAGCCCGG 3993 Query 48160 GACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATA 48219 | |||| || |||||||| | |||||| || ||||| || ||| | ||||||| | Sbjct 3992 GGCATTTATGGGGACACATTAGTGACCAGTCTCCATCAGATTCTACGCGTTTCATAAAAA 3933 Query 48220 TATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTAT 48279 ||| || ||||| ||||| |||||| || | | || |||| || || || ||| Sbjct 3932 GATCAGGAATCCAGAGAGCGTAAAATAAGTCACGCGCCCTGTGTTCATCTTTTCCTGTAT 3873 Query 48280 TCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCA 48339 | |||| | || | ||| || | ||||| | |||||| || || ||||| || || | Sbjct 3872 TTTTTTTCAAGTCTAAAAACTCGAAAATATCTGAATGCCAAGGCTCCAAATAAATAGCGA 3813 Query 48340 TTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTC 48399 | || || | ||| || ||||| |||| ||| | || ||| ||| |||||| Sbjct 3812 ACGCGCCGGGCCTTTTTCCGCCACCTTGGTCTACATAACGTGCTACATTATTAAAAACTC 3753 Query 48400 TTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAG 48459 | ||||| || || | |||||||||| | ||||| || || | ||| | |||| ||| Sbjct 3752 TCAACATAGGCACTAAACCATTTGATGTTCCATTAGTACCGCATATAGATGTTCCTTTAG 3693 Query 48460 CTCTTATATTACTA--ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACA 48517 ||| ||| | | |||| || || || || || || ||| || || | ||||| Sbjct 3692 CTCGAATACAATGAACATTG--ATTCCAATTCCTCCAGCTGATTTCGAAATCATTGCACA 3635 Query 48518 CCGTT-TAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAAC 48576 ||| || | | | | |||||||||| || ||| ||| ||| | | | ||||| Sbjct 3634 TTGTTCTACAGATTTGA-AAATTCCTTCAATGGAATCTGCTACCATTGTAAGCAAAAAAC 3576 Query 48577 AACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAA 48636 || |||| ||| || | ||| | | | |||||| |||||||| ||||| ||| Sbjct 3575 AAGATGACAGTTGTGGCCTTCTTGTTGCAGCAGCAAATAAAGTTGGAGAAGCATGGGTAA 3516 Query 48637 ACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC-CCATTGATGT 48695 | |||| || || | ||| || ||||||||||| ||| ||| || || || | ||| Sbjct 3515 AGTATTTTTCAGAAAGCAAATTGTATGTTTCAATGGCAGCATCGATGTCTTCACCG-TGT 3457 Query 48696 ATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATT 48755 || || | ||||| | ||| ||||||| || ||||| || |||| ||| || | | Sbjct 3456 ATTCCAACTGATACTCTCATCAACATATGCTGTGGTCTCTCTACAACTTTACCTTTAACT 3397 Query 48756 TTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTA 48815 || | | |||||| ||| | || ||||| ||||| || |||||| ||| || Sbjct 3396 TTAAGCAAATATGAACGTTCAAGAGTCTTAAAGCCAAAGTAATTGTATCCAAAATCACGG 3337 Query 48816 TCATTAATAATTGATGAATT 48835 |||| || |||| ||||| Sbjct 3336 TCATATATGATTGCCGAATT 3317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560897448509640