Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq50802 154 1e-31 seq172092 127 2e-23 seq168992 120 2e-21 seq171700 104 2e-16 seq10855 98.7 8e-15 >seq50802 Length=28812 Score = 154 bits (170), Expect = 1e-31 Identities = 151/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 550343 GTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCA 550402 |||||||||||||||||||||||||| | |||| | || | ||||| || ||| Sbjct 14526 GTTTTAATGAAAATGAAACAAACAGCTGAAGATTTTTTAGGCGAGCCTGTTACTGAAGCA 14467 Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462 || || ||||| || || || ||||| || |||| |||||||| || ||||||||||| Sbjct 14466 GTTATCACTGTTCCTGCTTACTTTAACGATGCACAGCGTCAAGCAACGAAAGATGCTGGC 14407 Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522 |||||||| || ||| |||| |||||||||||||| || || || || |||||||| Sbjct 14406 CGTATTGCGGGTCTTGATGTAAAACGTATTATCAATGAGCCAACAGCAGCAGCACTTGCT 14347 Query 550523 TATGGACTTGATAAA 550537 ||||| | |||||| Sbjct 14346 TATGGTATGGATAAA 14332 Score = 120 bits (132), Expect = 2e-21 Identities = 201/287 (70%), Gaps = 8/287 (3%) Strand=Plus/Minus Query 552301 TAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTA 552360 |||| || || ||| |||| | ||| | |||||| | || || |||||||||| || | Sbjct 13599 TAGACGTAACACCTTTATCATTAGGTATTGAAACAATGGGCGGCGTTATGACTAAACTCA 13540 Query 552361 TCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATA 552420 | || | ||| || || ||||| ||| | | ||||| || || | |||||| Sbjct 13539 TTGAGAAAAACACAACCATTCCAACAAAAGCAAGCCAAGTATTCTCAACAGCTACAGATA 13480 Query 552421 ATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCA--CTAAAGATAA 552478 ||||| | ||||| || ||||| |||| |||||| ||| || ||| || | || Sbjct 13479 ATCAACCAGCTGTAACGATTCATGTTTTACAAGGAG--AGAGAACTCAAGCTTCGCAAAA 13422 Query 552479 TAATCAAC--TTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCG 552536 ||| ||| | ||| ||| | |||| || |||||| || || || ||||| || || Sbjct 13421 TAA--AACGTTAGGTCAGTTTGACTTAGCAGATATTCCACCAGCGCCACGTGGTGTTCCA 13364 Query 552537 CAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGT 552583 ||||| ||||| || || ||||| ||||| ||||| ||| | ||||| Sbjct 13363 CAAATCGAAGTAACATTTGATATTGATGCGAATGGTATTATCAATGT 13317 >seq172092 Length=4071 Score = 127 bits (140), Expect = 2e-23 Identities = 156/210 (74%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 550343 GTTTTAATGAAAATGAAACAAACAGCC--AGTGCTTTTGT-TGGTCAAGAAGTTACGGAT 550399 |||||||||||||||||| | || || | | |||| | ||| | | | | | Sbjct 2854 GTTTTAATGAAAATGAAAGAGACTGCTGAATCGTATTTGAATTGTCCTGTA---AAGAAC 2798 Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| ||||||||||||||||||| ||||| |||||| | |||||||| |||||||| Sbjct 2797 GCAGTCGTAACTGTACCAGCATATTTCAATGATTCACAAAGGCAAGCTACAAAAGATGCC 2738 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | |||||||| | ||||| | ||| |||| |||||||| || || ||||| || Sbjct 2737 GGCCAAATTGCTGGTTTAAATGTCTTACGTGTTATTAATGAACCAACGGCAGCTGCCCTG 2678 Query 550520 GCATATGGACTTGATAAACATAATGATCAA 550549 || ||||| | |||||| | ||||| || Sbjct 2677 GCTTATGGTATGGATAAAACTGATGATAAA 2648 Score = 89.7 bits (98), Expect = 4e-12 Identities = 192/287 (67%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 552289 ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTA 552348 || || | ||| | ||||| ||||| | || || || | ||||| |||| ||| | Sbjct 1998 ATGTTCTTCTTTTGGATGTAACTCCATTGTCACTGGGAATTGAAACGCTTGGGGGTGTAT 1939 Query 552349 TGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTA 552408 | ||| | ||| ||||| || || ||||| |||||||||| || ||||| | Sbjct 1938 TCACTCGATTAATCTCAAGAAACACAACAATTCCAACAAAAAAATCTCAGGTGTTTTCAA 1879 Query 552409 CGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCA 552468 || | | ||| |||||| ||| ||| || || | |||| ||| || | | Sbjct 1878 CGGCTGCCGATGGTCAAACACAAGTTGAGATTAAAGTTCATCAAGGTGAACGAGAGATGG 1819 Query 552469 CTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTG 552528 | ||||||||| || || |||||| | | ||||||||||| || || || | Sbjct 1818 CAGCAGATAATAAAATGCTGGGCTCTTTTACCCTTGTTGGTATTCCTCCCGCACCACGAG 1759 Query 552529 GAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATT 552575 | ||||| ||||| |||||| || ||||| ||||| ||||| ||| Sbjct 1758 GTGTACCCCAAATCGAAGTTGTGTTTGATATAGATGCTAATGGCATT 1712 >seq168992 Length=1718 Score = 120 bits (132), Expect = 2e-21 Identities = 135/179 (75%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456 ||||| || || |||||||| || ||||||||||| ||||| || ||||| ||||||||| Sbjct 467 GATGCCGTCATTACTGTACCCGCTTATTTTAATGATTCACAGCGGCAAGCGACTAAAGAT 526 Query 550457 GCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516 || || |||||||| || ||||| || || || || || || || || |||||||| Sbjct 527 GCCGGCTCGATTGCTGGCCTGAATGTGCTGCGCATAATTAACGAGCCCACCGCTGCTGCT 586 Query 550517 CTTGCATATGGACTTGATAAACA--TAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 | |||||||| | |||||| | | | | | |||| ||||| || ||||||||| Sbjct 587 TTAGCATATGGCTTAGATAAAAATTTGAAGGGCGAGAA--AAATGTTCTGATCTTTGAT 643 >seq171700 Length=3140 Score = 104 bits (114), Expect = 2e-16 Identities = 123/164 (75%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 930664 TTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACCA 930723 ||||||| || |||||||||||||| ||||| ||||| |||| ||||| || || || | Sbjct 965 TTGATTTCTCGTCACCAAATATTGCAAAAGAGATGCACGTTGGGCATTTACGCTCAACGA 1024 Query 930724 TTATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAA-GTAAAGTTCATCGAGTC 930782 | || || || | ||||| || | |||| || ||||| | | || | || || Sbjct 1025 TAATAGGCGAGAGCATCTGTAGGTTCTTGGAAT-TTATGGAACATGATGTGCTACGTGTT 1083 Query 930783 AATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 930826 |||||| | || |||||||| || |||||||| ||||||||||| Sbjct 1084 AATCATTTGGGGGATTGGGGCACTCAATTTGGCATGTTAATTGC 1127 >seq10855 Length=7424 Score = 98.7 bits (108), Expect = 8e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || || |||||||| || || || || || || ||||| ||||| ||| ||| Sbjct 2455 AGCGATCGGCATAGATTTGGGCACAACCTACTCCTGCGTCGGTGTGTGGCAGAATAATAA 2514 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||| || || ||||||||||||||||| ||| | || || ||| ||||| | |||| Sbjct 2515 AGTCGAGATCATTGCCAATGATCAAGGCAACCGCACAACACCAAGCTATGTGGCATTCAA 2574 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA 550149 || || || | ||| |||| |||||||| ||| |||| Sbjct 2575 TGACACAGAGCGCTTAATTGGCGATGCAGCCAAAAATCA 2613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4020178657591490