Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq90214 80.6 8e-11 >seq90214 Length=2210 Score = 80.6 bits (88), Expect = 8e-11 Identities = 128/183 (70%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 26038 CCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTG 26097 ||||| || ||||| |||| ||||| || || || | || || || ||||| | |||| Sbjct 782 CCCTCGATATAAACAAGTGATCCTTTTTTGAGATATTGACCTGCAATTTCCGCAAGCTTG 841 Query 26098 CCAAACAGCACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCG----CCGGTCTGCTT 26153 ||||| | || || ||||||||| ||| |||| |||| | | || | || || Sbjct 842 CCAAAAATAACTACACGATGCCAT----TCAGTTCTATCTTGTTGCTGTCCTGATTGTTT 897 Query 26154 ATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGCAT 26213 ||| ||||||||||| || || || | | | | || || || || ||||||||||| Sbjct 898 ATCTTTCCAGCTTTCAGATGTTGCAATGTTTAGATTCGCAACGGCATTTCCATTAGGCAT 957 Query 26214 GTA 26216 || Sbjct 958 ATA 960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159490411520566