Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_017984.1 Length=46387 Score E Sequences producing significant alignments: (Bits) Value seq39426 91.5 4e-14 seq111999 86.0 2e-12 >seq39426 Length=18799 Score = 91.5 bits (100), Expect = 4e-14 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 41816 TTGAGGATAGAGCAGATAAGCGCCCAATGATGAGTGATTTGCGTGAATCTGGCCAAATCG 41875 ||||| | ||| | |||| | || | ||||||||| | ||||||||||| ||||| Sbjct 2781 TTGAGCAAAGACCTAATAAAAGACCTGTCATGAGTGATCTTCGTGAATCTGGAGCAATCG 2840 Query 41876 AACAAGATGCCAATACGATTTTATTTATTTATCGTGATGAGGTTTACAACAAACAAAGTA 41935 | |||||||| | || | ||||||||||| ||||| |||||||| |||| || Sbjct 2841 AGCAAGATGCTGACTTAATCTGCTTTATTTATCGAGATGAAGTTTACAATGAACAGAGCG 2900 Query 41936 AAGATATTGGGATTGCTGAAATTAT 41960 |||||| || ||||||| ||||| Sbjct 2901 AAGATAAGGGAGTTGCTGAGATTAT 2925 >seq111999 Length=4320 Score = 86.0 bits (94), Expect = 2e-12 Identities = 154/220 (70%), Gaps = 10/220 (5%) Strand=Plus/Minus Query 4135 CGTGAGTTTATGAATACGCTT-GCAGATTCTTCTATGGAGGAAATTAAGCAAGCTAT--- 4190 ||||| | ||||||| |||| | |||||| |||||| ||| | ||||||||||| Sbjct 4011 CGTGAATACATGAATA-GCTTAGAAGATTCGAGTATGGAAGAAGTCAAGCAAGCTATAAA 3953 Query 4191 -TCGTGAAGAGCCATTTCTAAATAATTATTATGAGATGGGTAAAAACTACATAAGAACCA 4249 || || || | | || ||| |||||| |||||| || | || || ||| | || | Sbjct 3952 ATC-TGTAG---CTTGGCTTAATGATTATTTTGAGATTGGCGAGAAGTATATACGCACGA 3897 Query 4250 AGAATAAGCGCGTAACTTACTCATTTTGTGGTTTGCGTCATAACTTAGATAGCATCAAGT 4309 | |||||||| || | ||| ||| | || || | || || | |||||||| || | Sbjct 3896 AAAATAAGCGTGTTAATTATATTTTTAGCGGATTAAGACACAATCTTGATAGCATAAAAT 3837 Query 4310 CTAAAGCACGTATTTTGCTTAGTTGGGTGGATGAGGCTGA 4349 | |||||| | ||||| || |||||| || ||||| || Sbjct 3836 CAAAAGCAAGAATTTTAATTGCTTGGGTTGACGAGGCGGA 3797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148013156669938