Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq111999 96.9 1e-15 >seq111999 Length=4320 Score = 96.9 bits (106), Expect = 1e-15 Identities = 168/239 (70%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 616 AAGCGGCGTGGTGCTATGCGCGCGTGAGTTCATGAACTCGCTG-GAAGAGTCGAGCATGC 674 |||||| || | ||||||| ||||| | |||||| | ||| ||||| ||||| ||| Sbjct 4033 AAGCGGTGTTATCTTATGCGCCCGTGAATACATGAA-TAGCTTAGAAGATTCGAGTATGG 3975 Query 675 AGGAAGTGAAGCAGGCGATCCTGTCTGTTCCCTGGCTGGCCGCCAACTTTGATATCGGCG 734 | ||||| ||||| || || ||||| | ||||| | | ||||| || |||| Sbjct 3974 AAGAAGTCAAGCAAGCTATAAAATCTGTAGCTTGGCTTAATGATTATTTTGAGATTGGCG 3915 Query 735 AGAAGTATATCCGCACCATCGACAAGAGCGTTAACTACGTGTTCTGCGGTCTGAGGCATA 794 |||||||||| ||||| | | ||| | ||||| || | || |||| | || || | Sbjct 3914 AGAAGTATATACGCACGAAAAATAAGCGTGTTAATTATATTTTTAGCGGATTAAGACACA 3855 Query 795 ACCTCGACAGCATCAAGTCGAAAGCGCGCATTCTGCTGTGC-TGGGTCGACGAGGCTGA 852 | || || ||||| || || ||||| | ||| | | ||| ||||| |||||||| || Sbjct 3854 ATCTTGATAGCATAAAATCAAAAGCAAGAATTTTAAT-TGCTTGGGTTGACGAGGCGGA 3797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156728078341436