Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq6671 109 4e-19 seq169730 84.2 2e-11 >seq6671 Length=4556 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || | ||| ||||| ||||| || || || |||||| || |||||||| || || Sbjct 4435 GCCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGA 4376 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | || | || ||||||||||| || ||||| |||| ||||| || || | || Sbjct 4375 CAAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 4316 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || || |||||||| |||||| || ||| | | | ||||| | ||| || Sbjct 4315 AATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGCTCGAC 4256 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || ||||| || |||||||| || || || |||||||| Sbjct 4255 CTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 4208 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || | ||| ||||| ||||| || || || |||||| || |||||||| || || Sbjct 3979 GCCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGA 3920 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | || | || ||||||||||| || ||||| |||| ||||| || || | || Sbjct 3919 CAAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 3860 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || || |||||||| |||||| || || | | | ||||| | ||| || Sbjct 3859 AATACCTTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCAATGGTGTCTGATGGCTCGAC 3800 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || ||||| || |||||||| || || || |||||||| Sbjct 3799 CTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3752 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || | ||| ||||||||||| || || ||| || || || |||||||| || || Sbjct 4207 GCCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGA 4148 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | ||| | || ||||| ||||| || || || |||| |||||||| || | || Sbjct 4147 CAATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGG 4088 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || || |||||||| |||||| || ||| | | | ||||| | || || Sbjct 4087 AATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGTTCGAC 4028 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || ||||| || |||||||| || || || |||||||| Sbjct 4027 CTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3980 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || | ||| ||||||||||| || || ||| || || || |||||||| || || Sbjct 3751 GCCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGA 3692 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | ||| | || ||||| ||||| || || || |||| |||||||| || | || Sbjct 3691 CAATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGG 3632 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || || || ||||| || || ||| ||| | | || || || | ||| || Sbjct 3631 AATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGCTCGAC 3572 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || || | ||||| ||||| || ||||| Sbjct 3571 TTCCAAGGTGATTGTCTTACCAGTGAGTGTTTTCACAAAGATTTGCAT 3524 >seq169730 Length=1905 Score = 84.2 bits (92), Expect = 2e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 48606 CGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCC 48665 ||| | || ||||| || || || |||||||||| ||||||||||| | |||| ||| Sbjct 1905 CGACCATCTTCCAATTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATTCCC 1846 Query 48666 TCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACC 48725 || ||||| |||||| ||| ||| | | || || || | ||| ||||| | Sbjct 1845 TCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACCTCAAGA 1786 Query 48726 GTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGTACGTGT 48779 || || ||||| ||||| | || ||||| || |||||||| ||| | |||| Sbjct 1785 GTGATGGTTTTGCCCGTAAGGGTCTTTACGAAGATCTGCATATTGTATCAGTGT 1732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380137197842523