Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq116181 183 7e-41 seq79 84.2 5e-11 >seq116181 Length=8378 Score = 183 bits (202), Expect = 7e-41 Identities = 382/555 (69%), Gaps = 27/555 (5%) Strand=Plus/Minus Query 150311 GGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGATTCT 150369 || || |||||||| | |||||||| || ||| || | | | || |||| | || Sbjct 2342 GGAAAGCTTGATCCTGTCATTGGTCGAGATGATGAGATTCGCCGCTGTA-TTCAAGTGCT 2284 Query 150370 TTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACA 150429 |||||| ||| ||||| ||| | ||| |||||||||| ||||||||||||||| Sbjct 2283 TTCTCGCCGAACTAAAAATAATCCAGTCTTAATTGGTGAACCTGGTGTTGGTAAAACAGC 2224 Query 150430 AATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAAGA 150489 || | || |||||||| ||| | || ||| || || || ||||| | ||||| | Sbjct 2223 GATTATCGAAGGATTAGCGCAAAGAATTATTAACGGCGAAGTGCCAGAAGGTTTGAAAAA 2164 Query 150490 TGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGA 150549 | | | ||||| | |||||||||| || | ||| ||| |||| | |||||||| Sbjct 2163 TAAATCAGTGCTTTCACTCGATATGGGTGCTTTAATTGCAGGTGCTAAATTCCGTGGTGA 2104 Query 150550 ATTCGAAGAACGTGTAGA--CAATTTGCTACAAGAACTAAAAGAACGCGATGATG----- 150602 ||||||||| ||| || | | ||| || | || || | | || |||||| Sbjct 2103 ATTCGAAGAGCGTTTAAAAGCGGTTT--TAAATGAGCT--TGGGAAGC-ATGATGGACAA 2049 Query 150603 -TTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGGT 150661 ||||| |||| || ||||| || ||||| || | |||||||| | | | ||| Sbjct 2048 ATTATTTTGTTTATTGATGAGATTCATACAATGGTTGGTGCTGG---AAAAGCAGATGGT 1992 Query 150662 TCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGTCATC 150721 | ||||| | ||||||||||||||||| ||||||| |||||| | | | || Sbjct 1991 GCGATGGATGCAGGAAATATGTTAAAACCTGCGTTATCTCGTGGTGAACTCCATTGTATT 1932 Query 150722 GGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGT 150781 ||||| ||||| | ||||||||||| || | || ||||||||| ||||||| | | Sbjct 1931 GGTGCGACAACATTAGATGAATATCGCCAATATATCGAAAAAGATCCAGCACTTGAAAGA 1872 Query 150782 CG-TTTCATGAAG-GTTGATATTGTTGAACCGACACTTGAAGAAAC--TCGCCAGATTGT 150837 | ||||| ||| ||| ||| |||||| || ||||||| || | || ||| | Sbjct 1871 AGATTTCAAAAAGTATTG--GTTGATGAACCAACCGTTGAAGATACGATTGC--AATTTT 1816 Query 150838 ACTTGGTGTTAAAAG 150852 || |||| ||||||| Sbjct 1815 ACGTGGT-TTAAAAG 1802 >seq79 Length=9527 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 97088 ATTTAAGTCTAGATTCACTAGATTTGGTTGAATTTATTATGGCAGTTGAAGAAGAATTTG 97147 |||||||| ||||| ||||| |||||||| ||||||| |||||||||| |||| Sbjct 1367 ATTTAAGTGCTGATTCTTTAGATACTGTTGAATTAGTTATGGCGCTTGAAGAAGAGTTTG 1426 Query 97148 ATGCTGAAATCTCTGATGAAGATGCAGAAAAATTTGAAACAATT 97191 || |||||| |||| ||||||||||| ||| || |||| || Sbjct 1427 ATTGTGAAATTCCTGACGAAGATGCAGAGAAAATTACAACAGTT 1470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1145055501551698