Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq40164 89.7 9e-13 seq62589 84.2 4e-11 >seq40164 Length=12509 Score = 89.7 bits (98), Expect = 9e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 61664 GTGTGGCGCAGTTTGGTAGCGCGCTTGCTCGGGATGCAAGAGGTCGCAGGTTCAAATCCT 61723 || ||||||||| ||||||||| ||||| ||| |||||| ||||| ||||||||||||| Sbjct 11156 GTATGGCGCAGTCTGGTAGCGCACTTGCATGGGGTGCAAGGGGTCGTAGGTTCAAATCCT 11215 Query 61724 GCTACACTGACCAGTTTAA 61742 |||| | ||||| ||||| Sbjct 11216 GCTATCCCGACCAATTTAA 11234 >seq62589 Length=22093 Score = 84.2 bits (92), Expect = 4e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 132960 GATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCA 133019 || ||||| |||||||||| |||||||||| ||||||||||| ||||||| |||||| Sbjct 3000 GACGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTTGGTTCA 3059 Query 133020 AATCCCTCCCCCGCATCCA 133038 ||||| | |||||| ||| Sbjct 3060 AATCCGGCTCCCGCAACCA 3078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 893836012210920