Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_019485.1 Length=59080 Score E Sequences producing significant alignments: (Bits) Value seq36071 91.5 6e-14 seq132057 84.2 8e-12 >seq36071 Length=11490 Score = 91.5 bits (100), Expect = 6e-14 Identities = 117/161 (73%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 55548 GGGATATAGCTCAGTTTGGTAGAGTGTCTGCTTTGGGAGCAGAATGTCGTTGGTTCAAGT 55607 || ||||||||||||| | ||||| | ||| | | ||||||||||| ||| Sbjct 8237 GGCATATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGT 8178 Query 55608 CCAGCTATCCCGACCAATT----AGTGCCTTTAGCTCAGACGGTTAGAGCAGCCGACTCA 55663 ||| ||| || ||||||| || ||||||||||||| |||||||||| ||||||| Sbjct 8177 CCAATTATGCCTACCAATTCTTAAGGGCCTTTAGCTCAGTTGGTTAGAGCACTCGACTCA 8118 Query 55664 TAATCGGTAGGTCACAGGTTCAAATCCTGTAGGGCGCACCA 55704 |||||| |||| ||||||| ||| | ||| ||||| Sbjct 8117 TAATCGAGTGGTCGTTGGTTCAAGTCCAACAAGGCCCACCA 8077 >seq132057 Length=1668 Score = 84.2 bits (92), Expect = 8e-12 Identities = 91/120 (76%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 55575 CTGCTTTGGGAGCAGAATGTCGTTGGTTCAAGTCCAGCTATCCCGAC--CAATTAGTGCC 55632 ||||||||||||||| | |||| ||||| | ||| || | |||||| || ||| || Sbjct 218 CTGCTTTGGGAGCAGGAGGTCGCAGGTTCGAATCCTGCCACCCCGACAAGAAATAGGTCC 277 Query 55633 TTTAGCTCAGACGGTTAGAGCAGCCGACTCATAATCGGTAGGTCACAGGTTCAAATCCTG 55692 |||||||| || ||||||| | | || ||| | ||||||| ||||||| ||||||| Sbjct 278 AGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCTCAGGTTCGAATCCTG 337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188547601806004