Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq153683 84.2 3e-11 seq128228 84.2 3e-11 >seq153683 Length=1711 Score = 84.2 bits (92), Expect = 3e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 169411 TACTCAAGTGGTCAACGAGAGCAGACTGTAAATCTGTTGCCTTCGGGCTTCGTAGGTTCA 169470 |||||||| |||||||||| |||||||||||||||| || | | | ||||| |||||| Sbjct 215 TACTCAAGCGGTCAACGAGGGCAGACTGTAAATCTGCTGGC-TAAGCCTTCGAAGGTTCG 273 Query 169471 AATCCTTCCCTCGCCACCAAT 169491 |||||||| | | |||||||| Sbjct 274 AATCCTTCTCCCACCACCAAT 294 >seq128228 Length=6682 Score = 84.2 bits (92), Expect = 3e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 169411 TACTCAAGTGGTCAACGAGAGCAGACTGTAAATCTGTTGCCTTCGGGCTTCGTAGGTTCA 169470 |||||||| |||||||||| |||||||||||||||| || | | | ||||| |||||| Sbjct 1071 TACTCAAGCGGTCAACGAGGGCAGACTGTAAATCTGCTGGC-TAAGCCTTCGAAGGTTCG 1013 Query 169471 AATCCTTCCCTCGCCACCAAT 169491 |||||||| | | |||||||| Sbjct 1012 AATCCTTCTCCCACCACCAAT 992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 775956193319600