Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq6671 91.5 1e-13 >seq6671 Length=4556 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 ||||||||||| ||||| |||||| | || ||||| || || ||| ||| || || Sbjct 3521 AAAATGCAAATCTTTGTGAAAACACTCACTGGTAAGACAATCACCTTGGAAGTCGAGCCA 3580 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | || | || |||||| |||||||| || | || ||| Sbjct 3581 TCTGACACTATTGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGAC 3640 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 |||||| | | ||||| || ||||| |||||||||||| | || || |||| || Sbjct 3641 CAACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACTAC 3700 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || || ||||| ||||| ||| |||| || | |||| || || || Sbjct 3701 AATATCCAGAAGGAATCCACTCTTCACTTGGTGTTGCGTCTACGCGGTGGCAT 3753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424510966154979