Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq161907 264 7e-65 seq50802 156 3e-32 seq172092 136 3e-26 seq169730 114 8e-20 seq168992 105 4e-17 seq6671 95.1 8e-14 seq140793 91.5 1e-12 >seq161907 Length=3211 Score = 264 bits (292), Expect = 7e-65 Identities = 421/595 (71%), Gaps = 8/595 (1%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 |||||||| |||||||| || || || ||||| ||||| | || | ||| |||| ||| Sbjct 2488 GCAATTGGCATTGATTTGGGTACAACATACAGCTGTGTTGGCGTCTTCCAACATGGCAAA 2547 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| ||||| || || ||||| ||| | |||||||| ||||| |||| || Sbjct 2548 GTGGAAATCATTGCAAACGATCAAGGCAATCGCACAACACCCAGCTATGTAGCTTTCACA 2607 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || |||| | ||| ||||| ||||| || || | |||| ||| ||||| || Sbjct 2608 GACTCTGAGCGTCTCATTGGCGATGCGGCGAAGAACCAAGTTGCCATGAATCCAAGCAAC 2667 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | || || || ||| | ||||||||||| || | ||||||| | | ||| | Sbjct 2668 ACAGTATTCGACGCGAAACGTTTGATTGGTCGCAAATATGATGATGAGAAAATACAAGCC 2727 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATA-TATAG-AAG 474626 || ||| || ||||| || |||||| |||||| | |||| |||||| | ||| | Sbjct 2728 GACATGAAGCACTGGCCATTCAAGGTGGTAAATGATTGTGGCAAACCAAAGCTTAGCGTG 2787 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 | | || ||||||| || |||| | || ||| |||| ||||||||| || Sbjct 2788 GAGTTCA--AAGGTGAACAGAAGAAATTCGCTCCAGAAGAAATCAGTTCAATGGTGTTGA 2845 Query 474687 CCAAAATGAAACAAACCGCGAGCTCATATCTTGGACA-AGAAGTAACTGATGCAGTAATT 474745 ||||||||||| |||| || ||||| |||| || | ||| | |||||||| || Sbjct 2846 CCAAAATGAAAGAAACAGCAGAAGCATAT-TTGGGCACAACAGTCAAGGATGCAGTCATC 2904 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || ||||| ||||| ||||| || || ||||| || || |||||||| || ||| Sbjct 2905 ACAGTGCCAGCCTATTTCAATGACTCGCAGCGTCAGGCCACCAAAGATGCAGGCGCAATA 2964 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || ||| | ||||| || || ||||| || || || |||||||| ||| | ||||||||| Sbjct 2965 GCTGGTTTGAATGTGTTGCGCATTATCAACGAGCCCACAGCAGCAGCATTGGCTTATGGT 3024 Query 474866 CTTGATAAGAATTCTGACA-AAGAAGTAAATGTTTTAATCTTTGATTGTGGAGGT 474919 | || ||||| ||||| | ||| ||||| |||| || |||| || ||| Sbjct 3025 TTGGACAAGAA-TCTGAAAGGTGAACGCAATGTGCTAATATTCGATTTGGGTGGT 3078 >seq50802 Length=28812 Score = 156 bits (172), Expect = 3e-32 Identities = 162/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 474680 GTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAA-GTAACTGATGC 474738 |||||| |||||||||||||| || | || | || | | || || ||||| || Sbjct 14526 GTTTTAATGAAAATGAAACAAACAGCT-GAAGATTTTTTAGGCGAGCCTGTTACTGAAGC 14468 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 ||| || |||||||| || || ||||| ||| | || ||||||||||| |||||||| || Sbjct 14467 AGTTATCACTGTTCCTGCTTACTTTAACGATGCACAGCGTCAAGCAACGAAAGATGCTGG 14408 Query 474799 AAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGC 474858 | ||||| |||||| |||| ||||||||| ||||| ||||||||||| |||||||| Sbjct 14407 CCGTATTGCGGGTCTTGATGTAAAACGTATTATCAATGAGCCAACAGCAGCAGCACTTGC 14348 Query 474859 TTATGGTCTTGATAAGAATTCTGACAAAGA 474888 ||||||| | ||||| || || | ||||| Sbjct 14347 TTATGGTATGGATAAAAACACTAAAAAAGA 14318 Score = 140 bits (154), Expect = 2e-27 Identities = 266/388 (69%), Gaps = 23/388 (6%) Strand=Plus/Minus Query 475785 AAAG-TGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTA 475843 |||| ||| |||||||||||||| || || | ||| || ||||| |||| | | ||||| Sbjct 13687 AAAGATGTGAATCCTGATGAAGCGGTAGCTTCTGGTGCGGCTGTTCAAGGTGGTGTTTTA 13628 Query 475844 TCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCA 475903 ||| | || | | | || || || | | |||||||| || | ||| Sbjct 13627 ---GGTGGA---------AATGTTACTGATGTTTTATTATTAGACGTAACACCTTTATCA 13580 Query 475904 TTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATC 475963 |||||| |||||||| | || || |||||||||| || ||||| | ||| || | || Sbjct 13579 TTAGGTATTGAAACAATGGGCGGCGTTATGACTAAACTCATTGAGAAAAACACAACCATT 13520 Query 475964 CCATGCAAAAAATCAA---AAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACC 476020 ||| | |||| ||| ||||||| || || | | ||||||||| || ||||||| Sbjct 13519 CCA---ACAAAAGCAAGCCAAGTATTCTCAACAGCTACAGATAATCAACCAGCTGTAACG 13463 Query 476021 ATCCAAATCTTTGAAGGTGAAAGAAAATTCA--CTAAAGATAATAACAAACTTGGAACTT 476078 || || | || |||| || |||| ||| || | ||||| | | || | Sbjct 13462 ATTCATGTTTTACAAGGAGAGAGAAC--TCAAGCTTCGCAAAATAAAACGTTAGGTCAGT 13405 Query 476079 TTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTG 476138 || | | | || |||||| || || || | || ||||| ||||| ||||| || |||| Sbjct 13404 TTGACTTAGCAGATATTCCACCAGCGCCACGTGGTGTTCCACAAATCGAAGTAACATTTG 13345 Query 476139 ATATTGATGCAAATGGTATTCTTAATGT 476166 |||||||||| ||||||||| | ||||| Sbjct 13344 ATATTGATGCGAATGGTATTATCAATGT 13317 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/221 (70%), Gaps = 10/221 (5%) Strand=Plus/Plus Query 290738 TTCATTAAT-GAAATATCTAATGTTCCTGCACCAAAATCGTATATAATAACATTACCTCC 290796 |||| | || || ||||| ||||| || |||| |||||||| | || ||| | | Sbjct 14260 TTCAATGATAGACATATCAAATGTACCACCACCTAAATCGTAAACTGCAATTTTAGCGTC 14319 Query 290797 ATTTTTATTTGTCCAAGTTTTGCTTCCAAGACCATATGTTAATGAAGCTGCTGTTGGTTC 290856 |||||| | ||||| | | | |||||| | | || ||||||||||| || Sbjct 14320 TTTTTTAGT-------GTTTTTATCC--ATACCATAAGCAAGTGCTGCTGCTGTTGGCTC 14370 Query 290857 ATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATCTAAAGTTGCCTGGCG 290916 ||| ||||| | | |||||||||||| ||||| | | |||| ||||| || || Sbjct 14371 ATTGATAATACGTTTTACATCAAGACCCGCAATACGGCCAGCATCTTTCGTTGCTTGACG 14430 Query 290917 TTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCTT 290957 || ||||| ||||| |||||||| || || ||||| |||| Sbjct 14431 CTGTGCATCGTTAAAGTAAGCAGGAACAGTGATAACTGCTT 14471 >seq172092 Length=4071 Score = 136 bits (150), Expect = 3e-26 Identities = 120/150 (80%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| | ||||| ||||||||||| |||||||| ||| | ||||| || |||||||| Sbjct 2797 GCAGTCGTAACTGTACCAGCATATTTCAATGATTCACAAAGGCAAGCTACAAAAGATGCC 2738 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || |||||| ||| | ||||| |||||| |||||||||||||||| ||||| || || Sbjct 2737 GGCCAAATTGCTGGTTTAAATGTCTTACGTGTTATTAATGAACCAACGGCAGCTGCCCTG 2678 Query 474857 GCTTATGGTCTTGATAAGAATTCTGACAAA 474886 ||||||||| | ||||| | | ||| ||| Sbjct 2677 GCTTATGGTATGGATAAAACTGATGATAAA 2648 Score = 100 bits (110), Expect = 2e-15 Identities = 248/376 (66%), Gaps = 24/376 (6%) Strand=Plus/Minus Query 475789 TGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGG 475848 ||| ||||| || |||||||| ||| |||||||| || |||| | | ||||| | || Sbjct 2069 TGTGAATCCCGACGAAGCTGTGGCAGTGGGAGCTGCAGTTCAAGGTGGTGTTTTAGCTGG 2010 Query 475849 TCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGG 475908 ||||| || || || | ||| | || ||||||||| | ||| | || Sbjct 2009 ------AGACGTGACCG------ATGTTCTTCTTTTGGATGTAACTCCATTGTCACTGGG 1962 Query 475909 TCTTGAAACAGTTGGAGGGATTAT------GACTAATCTTATTGACAGAAATACTCCTAT 475962 ||||||| |||| ||| ||| || |||||| | ||||| || | || Sbjct 1961 AATTGAAACGCTTGG-GGGTGTATTCACTCGATTAATCTCA-----AGAAACACAACAAT 1908 Query 475963 CCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCAT 476022 ||| |||||||| | || ||||| || | | ||| ||||||| || || Sbjct 1907 TCCAACAAAAAAATCTCAGGTGTTTTCAACGGCTGCCGATGGTCAAACACAAGTTGAGAT 1848 Query 476023 CCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAA 476082 || | | |||||||| || | | | ||||||||| | || || |||||| Sbjct 1847 TAAAGTTCATCAAGGTGAACGAGAGATGGCAGCAGATAATAAAATGCTGGGCTCTTTTAC 1788 Query 476083 TCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATAT 476142 |||| ||||||||||| || || |||| || || ||||| |||||| |||||||| Sbjct 1787 CCTTGTTGGTATTCCTCCCGCACCACGAGGTGTACCCCAAATCGAAGTTGTGTTTGATAT 1728 Query 476143 TGATGCAAATGGTATT 476158 ||||| ||||| ||| Sbjct 1727 AGATGCTAATGGCATT 1712 >seq169730 Length=1905 Score = 114 bits (126), Expect = 8e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | ||| || |||||||| || | ||| |||||||| ||||||||||| || || Sbjct 1900 ATCTTCCAATTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATTCCCTCTTT 1841 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| |||||||| ||||||| ||| |||||||||| | | | ||||| || || Sbjct 1840 GTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACCTCAAGAGTGAT 1781 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || ||||| ||||| || || Sbjct 1780 GGTTTTGCCCGTAAGGGTCTTTACGAAGATCTG 1748 >seq168992 Length=1718 Score = 105 bits (116), Expect = 4e-17 Identities = 276/413 (67%), Gaps = 16/413 (4%) Strand=Plus/Plus Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 || ||| | || ||||| ||| | | ||||| ||| ||| ||||||| | | ||| Sbjct 239 AACACTGTCTTCGATGCAAAACGTCTAATTGGCCGTCGTTTCGATGATAAGAAAATACAA 298 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA 474625 || || || ||||| ||||||||||| |||| || ||||| ||| | || || Sbjct 299 CAGGACATCAAGCACTGGCCATTTAAGGTGATCAATGACGGCGGTAAGCCAAAAATTGAG 358 Query 474626 GC--AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 | | | || | ||||| |||| ||| | || || | || |||||||| Sbjct 359 GTTGAGTTCAAG--GGTGAGCGCAAACGTTTTGCGCCCGAGGAGATAAGCTCAATGGTGC 416 Query 474684 TAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGA---CAAGAAGTAACTGATGCAG 474740 || | |||||| | ||| || |||||| ||| ||| ||||| | Sbjct 417 TAACGAAAATGCGTGAGGTTGCGGAAGTAT-TCTTGGGTGGCAA--AGTGCGCGATGCCG 473 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | |||||||| || || |||||||||||||| || || ||||| ||||||||||| || Sbjct 474 TCATTACTGTACCCGCTTATTTTAATGATTCACAGCGGCAAGCGACTAAAGATGCCGGCT 533 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 ||||| || || ||||| | || || ||||| || || || || || || | || | Sbjct 534 CGATTGCTGGCCTGAATGTGCTGCGCATAATTAACGAGCCCACCGCTGCTGCTTTAGCAT 593 Query 474861 ATGGTCTTGATAAGAATTCTGA---CAAAGAAGTAAATGTTTTAATCTTTGAT 474910 |||| | ||||| |||| ||| |||| ||||||| | ||||||||| Sbjct 594 ATGGCTTAGATAAAAATT-TGAAGGGCGAGAA--AAATGTTCTGATCTTTGAT 643 >seq6671 Length=4556 Score = 95.1 bits (104), Expect = 8e-14 Identities = 115/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | |||||| ||||| || || | ||| ||||| || || ||||| |||||||| Sbjct 4135 ATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGAATACCTTCCTT 4076 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 |||||||||||| |||||| ||||| || || | || | | | ||| ||| | Sbjct 4075 GTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGTTCGACCTCCAA-GGTGA 4017 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| ||||| | |||||| ||||| || || Sbjct 4016 TGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTG 3983 Score = 95.1 bits (104), Expect = 8e-14 Identities = 115/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | ||||| |||||||| || | ||| || || || |||||||| |||||||| Sbjct 4363 ATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTT 4304 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 |||||||||||| |||||| ||||| || || | || | | | ||| ||| | Sbjct 4303 GTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGCTCGACCTCCAA-GGTGA 4245 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| ||||| | |||||| ||||| || || Sbjct 4244 TGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTG 4211 Score = 86.0 bits (94), Expect = 4e-11 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | ||||| |||||||| || | ||| || || || |||||||| |||||||| Sbjct 3907 ATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTT 3848 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 |||||||||||| || || ||||| || || | || | | | ||| ||| | Sbjct 3847 GTCTTGAATCTTGGCCTTCACGTTCTCAATGGTGTCTGATGGCTCGACCTCCAA-GGTGA 3789 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| ||||| | |||||| ||||| || || Sbjct 3788 TGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTG 3755 >seq140793 Length=3577 Score = 91.5 bits (100), Expect = 1e-12 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 297333 TTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATTCATTATCCTTTTGAAAATTCCGA 297392 ||||||||| || || ||||||||||||| |||| | ||||||||||| |||||| || Sbjct 1456 TTGGTTTGATTCTGGATCTATGCCTTATGCTCAATTGCATTATCCTTTCGAAAATAAAGA 1397 Query 297393 AATTTTAGACACTTCACAAGAT-TATATTGCAGATTTTATAACAGAATCAATTGATCAAA 297451 | |||||| | | ||| | | |||||||||||| ||||| | | ||||||| Sbjct 1396 GTTAATAGACA-ATGGGACGATGTTTCCGGCAGATTTTATAGCAGAAGGAGTAGATCAAA 1338 Query 297452 CAAGAGGTTGGTTTTATACTTT 297473 | | || ||||||||||| || Sbjct 1337 CCCGTGGATGGTTTTATACCTT 1316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3260784084620348