Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq34316 102 9e-17 seq132057 95.1 1e-14 >seq34316 Length=5879 Score = 102 bits (112), Expect = 9e-17 Identities = 73/83 (88%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 157685 TTTTACGGGGTGTAGCGCAGCTTGGT-AGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGG 157743 ||||||||||||||||| ||| ||| | |||| ||||||||||||| |||||||||| Sbjct 1553 TTTTACGGGGTGTAGCGTAGCCCGGTCATCGCGCCTGCTTTGGGAGCAGGAGGTCGCAGG 1612 Query 157744 TTCGAATCCTGTCACCCCGACTT 157766 ||||||||||| ||||||||||| Sbjct 1613 TTCGAATCCTGCCACCCCGACTT 1635 >seq132057 Length=1668 Score = 95.1 bits (104), Expect = 1e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 156612 CAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCT 156671 ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||| Sbjct 277 CAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCTCAGGTTCGAATCCT 336 Query 156672 GTCTG 156676 | ||| Sbjct 337 GACTG 341 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 157690 CGGGGTGTAGCGCAGCTTGGT-AGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGA 157748 |||||||||||| ||| ||| | |||| ||||||||||||| ||||||||||||||| Sbjct 189 CGGGGTGTAGCGTAGCCCGGTTATCGCGCCTGCTTTGGGAGCAGGAGGTCGCAGGTTCGA 248 Query 157749 ATCCTGTCACCCCGAC 157764 |||||| ||||||||| Sbjct 249 ATCCTGCCACCCCGAC 264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546566797937160