Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq172366 178 7e-40 >seq172366 Length=6938 Score = 178 bits (196), Expect = 7e-40 Identities = 328/477 (69%), Gaps = 12/477 (3%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| | ||| |||||||| | || |||||||| || | ||| || ||| ||||| Sbjct 3940 CATAAAAAGATCAGGAATCCAGAGAGCGTAAAATAAGTCACGCGCCCTGTGTTCATCTTT 3881 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 ||| ||| ||||| | ||||| || || ||||||||||| ||||| || || ||||| Sbjct 3880 TCCTGTATTTTTTTTCAAGTCTAAAAACTCGAAAATATCTGAATGCCAAGGCTCCAAATA 3821 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 ||||| || || |||||||| |||||||| ||||| || | ||| | ||| Sbjct 3820 AATAGCGAACGCGCCGGGCCTTTTTCCGCCACCTTGGTCTACATAACGTGCTACATTATT 3761 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTG-- 26170 |||||| ||||||| || ||||| ||| |||| ||| || || | | || | | Sbjct 3760 AAAAACTCTCAACATAGGCACTAAACCATTTGATGTTCCATTAGTAC--CGCATATAGAT 3703 Query 26171 GATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATA 26230 | |||| | | || |||| ||| ||| || || ||||| ||||| |||| ||||| Sbjct 3702 GTTCCTTTAGCTCGAATACAATGAACATTGATTCCAATTCCTCCAGCTGATTTCGAAATC 3643 Query 26231 GCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAAT 26290 |||||| | | || | | ||||||||||| ||| ||| || |||| | Sbjct 3642 ATTGCACATTGTTCTACAGATTTGAAAATTCCTTCAATGGAATCTGCTACCATTGTAAGC 3583 Query 26291 AAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCA 26350 ||||||||||| || | ||| | ||||| | | | |||||| || || | |||| Sbjct 3582 AAAAAACAAGATGACAGTTGTGGCCTTCTTGTTGCAGCAGCAAATAAAGTTGGAGAAGCA 3523 Query 26351 TGAGTATAATATCCTTCACTCAAAGC----TGTATAAGTTTCAAGAACTTCATCGAT 26403 || ||| | ||| |||| ||||| ||||| ||||||| | ||||||| Sbjct 3522 TGGGTAAAGTATTTTTCA--GAAAGCAAATTGTAT--GTTTCAATGGCAGCATCGAT 3470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252508328246075